View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_low_10 (Length: 380)
Name: NF16555_low_10
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 211 - 368
Target Start/End: Complemental strand, 18228459 - 18228302
Alignment:
| Q |
211 |
taattataaagatagtgagtgatgtgggaatgtattgtctcatgttaaacttcctccggttttctccttgagcaatctcagccctctattccttttaata |
310 |
Q |
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| T |
18228459 |
taattataaagatagtgagtgatgtgggaatgtattgtctcatgttaaacttcctccagttttctccttgagcaatatcagccctctattccttttaata |
18228360 |
T |
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| Q |
311 |
cagatcaacggctaagaataaaaccaattaaaaattaacataaattttgtctatttca |
368 |
Q |
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| T |
18228359 |
cagatcaacgactaagaataaaaccaattaaaaattaacaaaaattttgtctatttca |
18228302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 18229028 - 18228880
Alignment:
| Q |
75 |
ggaggtacaatggtttgtgtttatgtgaaga---ggtttcataaag---------ttagaaagccacatacgaaaagggaaagttttgtgagccacaaat |
162 |
Q |
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| T |
18229028 |
ggaggtacaatggtttgtgtttatgtgaagaagaggtttcataaaggtcaaaaagttagaaagccacatacgaaaagggaaagttttgtgagccacaaat |
18228929 |
T |
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| Q |
163 |
tgttttggcctatgaaattcatacagttggcagtagaattcatgcacgta |
212 |
Q |
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| T |
18228928 |
t-ttttggcctatgagattcatacagttggcagtaggattcatgcacgta |
18228880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 18187327 - 18187273
Alignment:
| Q |
123 |
aagccacatacgaaaagggaaagttttgtgagccacaaattgttttggcctatga |
177 |
Q |
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| T |
18187327 |
aagccacatcagaaaagggaaagttttgtgagccacaaattgttttggcctatga |
18187273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 369
Target Start/End: Complemental strand, 1962650 - 1962514
Alignment:
| Q |
235 |
tgggaatgtattgtctcatgttaaacttcctccggttttctcctt--gagcaatctcagccctctattccttttaataca-gatcaacggctaagaataa |
331 |
Q |
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| T |
1962650 |
tgggaatggattgtctccagtcaaaatttctcctgttttctcctgtggagcaatcacagcccttcattccttttaatggaagatcaacggcttataataa |
1962551 |
T |
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| Q |
332 |
aaccaattaaaaattaacataaattttgtctatttcat |
369 |
Q |
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| T |
1962550 |
aatcaattaaaa-tcaacataaattctgtctatttcat |
1962514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 1961987 - 1962097
Alignment:
| Q |
236 |
gggaatgtattgtctcatgttaaacttcctccggttttctcctt--gagcaatctcagccctctattccttttaata-cagatcaacggctaagaataaa |
332 |
Q |
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| T |
1961987 |
gggaatggattgtctccagtcaaaatttctccagttttctcctgtggagcaatcatagccctccattccttttaatggcagatcaacggcttataataaa |
1962086 |
T |
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| Q |
333 |
accaattaaaa |
343 |
Q |
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| T |
1962087 |
accaattaaaa |
1962097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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