View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_low_12 (Length: 371)
Name: NF16555_low_12
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 35886512 - 35886159
Alignment:
| Q |
1 |
ttaaacagtaaatttaaacgtcaaaatcaattatagaattgaaaactctatttctttttgaacattaaaatcaatttttgaagcagaataaattcaattc |
100 |
Q |
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| T |
35886512 |
ttaaacagtaaatttgaacgtcaaaatcaattatagaattgaaaactctatttctttttgaacattaaaatcaatttttgaagcagaataaattcaattc |
35886413 |
T |
|
| Q |
101 |
aagagtaatcaagattttcaaaatcaattctacacattccaattcaccgtaaacaagttaactctaactagtagagaaagtgtattagatttagagggag |
200 |
Q |
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| T |
35886412 |
aagagtaatcaagattttcaaaatcaattctacacattccaattcaccgtaaacaagttaactctaactagtagagaaagtgtattagatttagagggag |
35886313 |
T |
|
| Q |
201 |
tgaaggtgaatccttgtccttaaggatgaattactcaccatccaggaaacttcttcaaagggccaaatgttcaagtcacactcgtggtccctaataaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35886312 |
tgaaggtgaatccttgtccttaaggatgaattactcaccatccaggaaacttcttcaaagggccaaatgttcaagtcacactcgtggtccctaataaatc |
35886213 |
T |
|
| Q |
301 |
atctattttgatcttgtcgtgtctaatannnnnnngagagggtgtttaatatta |
354 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35886212 |
atctattttgatcttgtcgtgtctaatatttttttgagagggtgtttaatatta |
35886159 |
T |
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