View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16555_low_13 (Length: 341)

Name: NF16555_low_13
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16555_low_13
NF16555_low_13
[»] chr6 (10 HSPs)
chr6 (19-338)||(2926670-2926989)
chr6 (19-335)||(2934109-2934425)
chr6 (29-335)||(3004033-3004339)
chr6 (23-338)||(2951456-2951771)
chr6 (19-322)||(2997662-2997965)
chr6 (30-335)||(2982387-2982698)
chr6 (31-338)||(2659252-2659559)
chr6 (19-322)||(2963992-2964301)
chr6 (19-185)||(2972508-2972676)
chr6 (223-322)||(2973727-2973826)
[»] chr7 (1 HSPs)
chr7 (19-325)||(3338691-3338997)
[»] scaffold0024 (1 HSPs)
scaffold0024 (30-335)||(35476-35784)
[»] chr3 (1 HSPs)
chr3 (210-311)||(49618096-49618197)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 2926670 - 2926989
Alignment:
Q  19 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 118  Q
    ||||||||||||||| ||||| || ||||| | ||||||||||| | ||||  |||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  2926670 aaccgatgactgttgtatctataaggtcccctatgttattcgcagacacaacaaagacgcatacacccccaaggtcgtttctattggcccctttcaccac 2926769  T
Q  119 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 218  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  2926770 ggtcaaccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtcggctaca 2926869  T
Q  219 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 318  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2926870 tagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgcttttat 2926969  T
Q  319 aattcaattttcttggacat 338  Q
    ||||||| ||| ||||||||    
T  2926970 aattcaacttttttggacat 2926989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 2934109 - 2934425
Alignment:
Q  19 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 118  Q
    ||||||||||||||||||||| || ||||| | ||||||||||| | ||||  |||||||||||||||| |  || |||||||||||||||| |||||||    
T  2934109 aaccgatgactgttgcatctataaggtcccttatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattggcccctttcaccac 2934208  T
Q  119 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2934209 ggtcacccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtctgctaca 2934308  T
Q  219 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 318  Q
    |||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  2934309 tagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgcttttat 2934408  T
Q  319 aattcaattttcttgga 335  Q
    ||||||| ||| |||||    
T  2934409 aattcaacttttttgga 2934425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 335
Target Start/End: Complemental strand, 3004339 - 3004033
Alignment:
Q  29 tgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcaccccc 128  Q
    |||||||||||||| ||||| | ||||||||||| | ||||  |||||||||||||||| |  || |||||||||||||||| |||||||||||||||||    
T  3004339 tgttgcatctacaaggtcccctatgttattcgcagacacaacaaagacgcatacacccccactgtcgtttccattggcccctttcaccacggtcaccccc 3004240  T
Q  129 agcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaatctat 228  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  3004239 agctccaaaacatggaaaatcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagtctgctacatagaatctgt 3004140  T
Q  229 cttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaattt 328  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3004139 cttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaactt 3004040  T
Q  329 tcttgga 335  Q
    | |||||    
T  3004039 ttttgga 3004033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 2951456 - 2951771
Alignment:
Q  23 gatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtc 122  Q
    ||||| |||||||||||||| ||||| | |||||||||||   ||||  |||||||||||||||| ||||| |||||||||||||||| |||||| ||||    
T  2951456 gatgagtgttgcatctacaaggtcccctatgttattcgcaggcacaacaaagacgcatacacccccaaggtcgtttccattggcccctttcaccatggtc 2951555  T
Q  123 acccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacataga 222  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||   |||||||||    
T  2951556 acccccagctccaaaacatggaaagtcagaaactcatttacttcaaggattttctccaaagaaccaaggcatgtttaaacgacttagttgtctacataga 2951655  T
Q  223 atctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 322  Q
    |||||||||||||  ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2951656 atctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 2951755  T
Q  323 caattttcttggacat 338  Q
    ||| ||| ||||||||    
T  2951756 caacttttttggacat 2951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 2997965 - 2997662
Alignment:
Q  19 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 118  Q
    ||||| |||||||||||||||||| ||||| |||   |||||||||  ||| | ||||||||||||||| |  || |||||||||||||||| ||||||     
T  2997965 aaccggtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgcagacgcatacacccccactgtcgtttccattggcccctttcaccat 2997866  T
Q  119 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 218  Q
    ||||| || ||||| ||||||||||||  ||||||||||||| |||| || | |||||||||| ||||  || |||||||||| |||||||| ||||||     
T  2997865 ggtcatccacagctccaaaacatggaacctcagaaactcattcacttcaaagcttttctccaacgaactgaggcatgtttaaatgacttagtatgctacg 2997766  T
Q  219 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 318  Q
    |||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2997765 tagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggttttat 2997666  T
Q  319 aatt 322  Q
    ||||    
T  2997665 aatt 2997662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 2982387 - 2982698
Alignment:
Q  30 gttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcaccc--- 126  Q
    ||||||||||||| ||||| ||||||||||||| |  ||| ||| ||||||||||||| || || |||||||||||||||| ||||||||||||||        
T  2982387 gttgcatctacaaggtcccctctgttattcgcacagtcaacgaaaacgcatacacccccaatgtcgtttccattggcccctttcaccacggtcacctagg 2982486  T
Q  127 ---ccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaa 223  Q
       ||| || |||||||||||| ||||||| |||||| |||| || | |||||| ||| ||||| || ||| |||||||||||| ||||||||| ||||     
T  2982487 cctccatctccaaaacatggaacgtcagaagctcattcacttcaaagcttttcttcaacgaaccgaggcatctttaaacgacttggtctgctacgtagat 2982586  T
Q  224 tctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattc 323  Q
    ||||||||||||  ||||||||  | |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2982587 tctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagttaatcttaatcgattccgcttttataattc 2982686  T
Q  324 aattttcttgga 335  Q
    || ||| |||||    
T  2982687 aacttttttgga 2982698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 31 - 338
Target Start/End: Complemental strand, 2659559 - 2659252
Alignment:
Q  31 ttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcacccccag 130  Q
    |||||||||||| ||||| |||| |||||||| |  ||| ||| | ||||||||||| |   | |||||||||||||||| |||||| | ||||||||||    
T  2659559 ttgcatctacaaggtcccctctgctattcgcacactcaacgaaaaagcatacacccccactctcgtttccattggcccctttcaccatgatcacccccag 2659460  T
Q  131 cttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaatctatct 230  Q
    || |||||||||||| |||| |||||||||||||| || | |||||||||| |||||||  |||||||| ||  ||| ||| || ||||| |||||| ||    
T  2659459 ctccaaaacatggaacgtcacaaactcatttacttgaaagcttttctccaacgaaccaatgcatgtttagacaccttggtcagcaacataaaatctaact 2659360  T
Q  231 tatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaattttc 330  Q
    |||||  ||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||||| |||     
T  2659359 tatctcgtttcaaaagttgttattccgaaaccctaccattttctgataatgaacttgttaagttaatcttaatcgattcctgttttataattcaactttt 2659260  T
Q  331 ttggacat 338  Q
    ||||||||    
T  2659259 ttggacat 2659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 2963992 - 2964301
Alignment:
Q  19 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 118  Q
    |||| |||| |||||||||||||| ||||| |||| |||||||| |  ||| ||| ||||||||||||| ||| | |||||||| ||||||| |||||||    
T  2963992 aacctatgattgttgcatctacaaggtcccctctgatattcgcacactcaacgaaaacgcatacacccccaagttcgtttccatcggcccctttcaccac 2964091  T
Q  119 ggtcacccccagc------ttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtct 212  Q
    ||||||||||| |      | |||||||||||| | || |||||||||||||| || |||||||||||| ||||| |||||  |||||||||  | ||||    
T  2964092 ggtcacccccacccccagatccaaaacatggaacgacaaaaactcatttacttcaaagattttctccaacgaaccgagacaactttaaacgaaatggtct 2964191  T
Q  213 gctacatagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgc 312  Q
     |||||||||  |||||||||||  ||||||| | | |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |     
T  2964192 actacatagatgctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctgg 2964291  T
Q  313 ttttataatt 322  Q
    ||||||||||    
T  2964292 ttttataatt 2964301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 2972508 - 2972676
Alignment:
Q  19 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcata--cacccctaaggttgtttccattggcccctatcacc 116  Q
    ||||| |||||||||||||||||| ||||| |||   |||||||||  ||| ||||| |||||  ||| || || || |||||||||||||||| |||||    
T  2972508 aaccggtgactgttgcatctacaaggtcccctctaaaattcgcaaactcaacgaagaggcatatacactcccaaagtcgtttccattggcccctttcacc 2972607  T
Q  117 acggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaa 185  Q
    ||| |||  ||||||| |||||||||||| |||| |||||||||||||| || | ||||||| ||||||    
T  2972608 acgttcaaacccagctccaaaacatggaacgtcacaaactcatttacttcaaagcttttctcaaaagaa 2972676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 2973727 - 2973826
Alignment:
Q  223 atctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataatt 322  Q
    |||||||||||||  ||||||| | | ||||||| |||||||| |||||||||||  |||||||||||||||||| ||||| ||||||| ||||||||||    
T  2973727 atctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttataatt 2973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 3338691 - 3338997
Alignment:
Q  19 aaccgatgactgttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccac 118  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  3338691 aaccgatgactgttgcatctacaaagtaccctctgttattcgcaaacacaatgaagacgcatacacccctaagttcgtttccattggcccctttcaccac 3338790  T
Q  119 ggtcacccccagcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctaca 218  Q
    ||| |  |||  ||  ||||||||||| |||| |||||||||||||| || | |||||||||| ||||| || |||||||||| ||||| |||| ||||     
T  3338791 ggtaaaacccgactctaaaacatggaacgtcacaaactcatttacttcaaagcttttctccaacgaaccgaggcatgtttaaaagacttggtcttctacg 3338890  T
Q  219 tagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttat 318  Q
    |||| ||||||||| ||  ||||||||||| |||||| |||  |||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  3338891 tagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatcgattccggttttat 3338990  T
Q  319 aattcaa 325  Q
    |||||||    
T  3338991 aattcaa 3338997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 35784 - 35476
Alignment:
Q  30 gttgcatctacaaagtcccatctgttattcgcaaatacaatgaagacgcatacacccctaaggttgtttccattggcccctatcaccacggtcaccccca 129  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||    
T  35784 gttgcatctacaaggtcccctctgttattcgcaaacacaatgaagacgcatacacccctaatttcgtttccattggcccctttcaccacggtcaccccca 35685  T
Q  130 gcttcaaaacatggaaagtcagaaactcatttacttaaaggattttctccaaagaaccaagacatgtttaaacgacttagtctgctacatagaatctatc 229  Q
    |||  ||||||||||| |||| |||||||||||||| || |||||||||||| |||||||  ||| ||||| |  |||  || || ||||| | ||||||    
T  35684 gctcaaaaacatggaacgtcacaaactcatttacttcaaagattttctccaacgaaccaatgcatctttaagcatcttgatcagcgacatatattctatc 35585  T
Q  230 ttatcttttttcaaacgttcttattccgaaaccctaccattttctc---atgatgaacttgttaagttaatcttaatcgattccgcttttataattcaat 326  Q
    ||||||  ||||||| ||| |||||| ||||||||| ||||| |||   |||| ||||||||||||||||||||||||||||||| |||||||||||||     
T  35584 ttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccggttttataattcaac 35485  T
Q  327 tttcttgga 335  Q
    ||| |||||    
T  35484 ttttttgga 35476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 311
Target Start/End: Original strand, 49618096 - 49618197
Alignment:
Q  210 tctgctacatagaatctatcttatcttttttcaaacgttcttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattc 309  Q
    ||||||||||||| || |||||||||  |||||| |  ||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||| |||||    
T  49618096 tctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaagttaatcttaattgattc 49618195  T
Q  310 cg 311  Q
    ||    
T  49618196 cg 49618197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University