View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_low_15 (Length: 330)
Name: NF16555_low_15
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 12532325 - 12532003
Alignment:
| Q |
10 |
gaagaatatacacaaaaacaaacaatgaagcaaagttttggacacaatttaattcataaagcagaggacagcatacaccacacaaattaggcacatcctt |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12532325 |
gaagaaaatacacaaaaacaaacaatgaagcaaagttttggagacaatttaattcataaagcagaggacagcatacaccacacaaattaggcacatcctt |
12532226 |
T |
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| Q |
110 |
gatggacaaggccaaactatttt--cccatctatgaagcaacgacacacacaaaactaacacataaacccccataataattaaacgatagaagtgtttta |
207 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12532225 |
gatggacaaggccaaactattttttcccatctacgaagcaacgacacacacaaaactaacacataaacccccataataattaaacgatagaagtgtttta |
12532126 |
T |
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| Q |
208 |
atgtatgtagcaacacatgttaatctcatacaagtgcagacatgagttatcaccaagatatttcaggcataccttcaatttgaataatcaaagcgtccca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| |
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| T |
12532125 |
atgtatgtagcaacacatgttaatctcatacaagtgcagacatgagttatcaccaagatatgtcaagcataccttcaatttgaataatcaaagcatccct |
12532026 |
T |
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| Q |
308 |
attagtattacatcaatttcaat |
330 |
Q |
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||||||||||||||||||||||| |
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| T |
12532025 |
attagtattacatcaatttcaat |
12532003 |
T |
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