View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_low_2 (Length: 724)
Name: NF16555_low_2
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 398
Target Start/End: Complemental strand, 12845673 - 12845285
Alignment:
| Q |
5 |
ccaaattagaggtattgaacttgtcccggtccgtgactgatgatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattggacctgga |
104 |
Q |
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| T |
12845673 |
ccaaattagaggtattgaacttgtcccggtccgcgaccgatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattggacctgga |
12845574 |
T |
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| Q |
105 |
aagtggttatgatgttacagagaagatagtgaggcaagtagtagaaaaatgcagaaagctgagagagatcaatcaatttgagggattgtcaaaatgtggc |
204 |
Q |
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| T |
12845573 |
aaattgtaatgatgttacagagaagggagtgaggcaagtggtagcaaaatgcacaaagttgagagagat----caatttgagggattgtcaaaatgtggc |
12845478 |
T |
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| Q |
205 |
tggtaatgttgtttccgagattgtactttcaaggccatcgttgaggaagctaacgattccccctttttatcgtcctattgatcacgaaagggaactcttc |
304 |
Q |
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| T |
12845477 |
tggtaatgttgtttctgagatggtactttcaaggccatcattaagaaagataacaattcctcctttttatcatcctagtgatcatgaaagggaactcttc |
12845378 |
T |
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| Q |
305 |
ttgcatcatggatgccttgtttgctagcattttgggaagttctctgccaaagtatgaaatataagatgtttatgtttccaaagttacttctttg |
398 |
Q |
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| T |
12845377 |
ttgcatcatggatgccttgttttctagta-ttccggacgtgatctgccaaagtataaaatgtaagatgtttatgtttccagagttacttctttg |
12845285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 521
Target Start/End: Complemental strand, 12844723 - 12844690
Alignment:
| Q |
488 |
cttgtagttgtaactgcataagacaattgatttt |
521 |
Q |
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| T |
12844723 |
cttgaagttgtaactgcataagacaattgatttt |
12844690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 6006119 - 6006077
Alignment:
| Q |
297 |
aactcttcttgcatcatggatgccttgtttgctagcattttgg |
339 |
Q |
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| T |
6006119 |
aactcttcttgcgtcatggatgccttgtttgctagtattttgg |
6006077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 12123430 - 12123480
Alignment:
| Q |
46 |
gatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattg |
96 |
Q |
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| T |
12123430 |
gatgaagcactttatgcaatcccaaaaagttgtcgtgggcttttgcaattg |
12123480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 51120949 - 51121003
Alignment:
| Q |
42 |
tgatgatgaagcactatatgcaatctcaaagagttgtcgtggtctattgcaattg |
96 |
Q |
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| T |
51120949 |
tgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattg |
51121003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 18315514 - 18315559
Alignment:
| Q |
290 |
gaaagggaactcttcttgcatcatggatgccttgtttgctagcatt |
335 |
Q |
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| T |
18315514 |
gaaagggaactcttctcgcgtcaaagatgccttgtttgctagcatt |
18315559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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