View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16555_low_25 (Length: 259)

Name: NF16555_low_25
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16555_low_25
NF16555_low_25
[»] chr4 (4 HSPs)
chr4 (24-252)||(23062259-23062487)
chr4 (35-252)||(32880670-32880874)
chr4 (93-178)||(43992238-43992323)
chr4 (81-175)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (24-252)||(28592866-28593093)
[»] chr6 (2 HSPs)
chr6 (24-252)||(25907261-25907489)
chr6 (99-202)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (24-252)||(21279261-21279489)
chr8 (97-206)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (165-252)||(30302015-30302101)
chr5 (135-181)||(14779531-14779577)
chr5 (99-175)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (81-231)||(9817132-9817282)
chr7 (81-231)||(10719057-10719207)
chr7 (162-208)||(20483935-20483981)
chr7 (93-181)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (81-231)||(15229641-15229790)
chr1 (84-213)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (97-199)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (97-206)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (99-205)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 23062487 - 23062259
Alignment:
24 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 123  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062487 tgtcagagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 23062388  T
124 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062387 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 23062288  T
224 taatgatgaaggggtacgaattgatgatg 252  Q
    ||||||||||||||||||||||| |||||    
23062287 taatgatgaaggggtacgaattgctgatg 23062259  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 32880670 - 32880874
Alignment:
35 aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 134  Q
    ||||||||||||| |||||||||||||||||||||||||||             ||||||||||||||||||||||||| || |||||||||||||||||    
32880670 aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca 32880756  T
135 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 234  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
32880757 cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaag 32880856  T
235 gggtacgaattgatgatg 252  Q
    |||||||||||| |||||    
32880857 gggtacgaattgctgatg 32880874  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
93 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc 178  Q
    |||||||||||||||||||||||| ||||  ||||||| || || ||||||||||||||||| || ||||| || |||||||||||    
43992323 atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc 43992238  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
81 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 175  Q
    ||||| || |||||||| ||||||||||| ||||||||||| || ||||| |  |||||||| |||||||||||  | || || |||||||||||    
19318928 atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca 19318834  T

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Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 28593093 - 28592866
Alignment:
24 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 123  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
28593093 tgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaac 28592995  T
124 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
28592994 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttgga 28592895  T
224 taatgatgaaggggtacgaattgatgatg 252  Q
    ||||||||||||||||||||||| |||||    
28592894 taatgatgaaggggtacgaattgctgatg 28592866  T

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Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 25907489 - 25907261
Alignment:
24 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 123  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907489 tgtcggagtcgaggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 25907390  T
124 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 223  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25907389 gagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttgga 25907290  T
224 taatgatgaaggggtacgaattgatgatg 252  Q
    ||||||||||||||||||||||| |||||    
25907289 taatgatgaaggggtacgaattgctgatg 25907261  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
99 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 198  Q
    |||||||||| ||| ||| ||||  |||| || || ||||||||||||||||| || |||||||| | ||| ||||||||  |||| || ||||||||||    
21695849 caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga 21695948  T
199 aggt 202  Q
    ||||    
21695949 aggt 21695952  T

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Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 21279489 - 21279261
Alignment:
24 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 123  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || |    
21279489 tgtcggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaac 21279390  T
124 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 223  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||   |||||||| |||||||| ||||||||||||||||||| |||||||||| ||||    
21279389 gagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctgga 21279290  T
224 taatgatgaaggggtacgaattgatgatg 252  Q
    |||||||||| |||||||| ||| |||||    
21279289 taatgatgaacgggtacgagttgctgatg 21279261  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
97 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 196  Q
    |||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || |||||    
28164989 ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa 28164890  T
197 gaaggtaaac 206  Q
    ||| ||||||    
28164889 gaaagtaaac 28164880  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 30302015 - 30302101
Alignment:
165 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgatgatg 252  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
30302015 aaattttttcatgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatg 30302101  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
135 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 181  Q
    ||||||||||||||||| |||||||| ||||| |||||| |||||||    
14779531 cactggtatcgtgatggggacttgaacaccaattttttttatgcttc 14779577  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
99 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 175  Q
    |||||||||| ||||||||||||  |||| || || ||||||||||| |||||  ||||||| || ||||| |||||    
20584724 caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca 20584800  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 9817282 - 9817132
Alignment:
81 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 180  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
9817282 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 9817183  T
181 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 231  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
9817182 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 9817132  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 10719207 - 10719057
Alignment:
81 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 180  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
10719207 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 10719108  T
181 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 231  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
10719107 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 10719057  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 20483935 - 20483981
Alignment:
162 accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccg 208  Q
    |||||||||||||||||||| |||||||  ||||| |||||||||||    
20483935 accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccg 20483981  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
93 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 181  Q
    ||||| ||||| ||||| |||||||| ||||| || || || || |||||||||||||||||  | || || || ||||||||||||||    
21115432 atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc 21115520  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 15229641 - 15229790
Alignment:
81 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 180  Q
    ||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| |||    || ||||||    
15229641 atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt 15229739  T
181 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 231  Q
    ||||||| ||  |||| ||||||||||| |||||||||||||| |||||||    
15229740 cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatg 15229790  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
84 acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag 183  Q
    |||||| ||||||||||||| ||||| |||||| | || ||||| ||||  || |||||||||| ||| ||  ||||||| |||||||||||||| ||      
10505436 acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta 10505337  T
184 ccacgtcaagaaagaaggtaaaccgcatta 213  Q
    |||| || | |||||||||||||| |||||    
10505336 ccacatctaaaaagaaggtaaaccacatta 10505307  T

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Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 540 - 438
Alignment:
97 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 196  Q
    ||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || |||||    
540 ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa 441  T
197 gaa 199  Q
    |||    
440 gaa 438  T

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Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
97 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 196  Q
    ||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || ||  ||||    
26815 ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa 26716  T
197 gaaggtaaac 206  Q
    ||| ||||||    
26715 gaaagtaaac 26706  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
99 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 198  Q
    |||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || |||||||    
34932178 caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga 34932277  T
199 aggtaaa 205  Q
    | |||||    
34932278 aagtaaa 34932284  T

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