View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16555_low_3 (Length: 580)
Name: NF16555_low_3
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 566
Target Start/End: Original strand, 24906402 - 24906949
Alignment:
| Q |
10 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24906402 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgaaaggattccaacaccaaaacctc |
24906501 |
T |
|
| Q |
110 |
caacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
209 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24906502 |
caacaacaaaaatccttatagaaaaactcctcaaagaagcttctgatt---------cacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24906592 |
T |
|
| Q |
210 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacacaagttgctcatct |
309 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
24906593 |
tgcctctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttgttcatct |
24906692 |
T |
|
| Q |
310 |
tcatgtttagcaacagaattaattgaagctagttttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctatca |
409 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24906693 |
tcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctataa |
24906792 |
T |
|
| Q |
410 |
acatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatgagattattacaaaa |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24906793 |
acatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctttaatgagattattacaaaa |
24906892 |
T |
|
| Q |
510 |
aggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagt |
566 |
Q |
| |
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||||||||||||||||||||||||||||||| | || |||||||||| |||||||| |
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| T |
24906893 |
gggtaactacgattcaagaacatacgcagtttgtttgctgaaatctatatcaaaagt |
24906949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 566
Target Start/End: Complemental strand, 24891024 - 24890477
Alignment:
| Q |
10 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24891024 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgaaaggattccaacaccaaaacctc |
24890925 |
T |
|
| Q |
110 |
caacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
209 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890924 |
caacaacaaaaaaccttatagaaaaactcctcaaagaagcttctgattc---------acctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24890834 |
T |
|
| Q |
210 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacacaagttgctcatct |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
24890833 |
tgcatccgagagcgaaacaaatagacggtgtatcgaatcggcaggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttgttcatct |
24890734 |
T |
|
| Q |
310 |
tcatgtttagcaacagaattaattgaagctagttttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctatca |
409 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
24890733 |
tcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctataa |
24890634 |
T |
|
| Q |
410 |
acatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatgagattattacaaaa |
509 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||| |
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| T |
24890633 |
acatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttatagactctttaataaaattattacaaaa |
24890534 |
T |
|
| Q |
510 |
aggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagt |
566 |
Q |
| |
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||||||||||| ||||||||||||||||||| | || |||||||||| |||||||| |
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|
| T |
24890533 |
gggtaactacgaatcaagaacatacgcagtttatatgatgaaatctatatcaaaagt |
24890477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 10 - 566
Target Start/End: Original strand, 24898943 - 24899490
Alignment:
| Q |
10 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttatggaattgataggattccaacaccaaaacctc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |
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|
| T |
24898943 |
attattctcactccaaaccacactcttcgtagactcatccaagcatggtgcaccatgaattcttcttttggaattgaaaggattccaactccaaaacctc |
24899042 |
T |
|
| Q |
110 |
caacaacaaaaacccttgtagaaaaactcctcaaagaagcttctgattcttcagattcacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
209 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899043 |
caacaacaaaaatccttatagaaaaactcctcaaagaagcttctgatt---------cacctcatttgcttattcaaaccctaaaaaagctcaaaacaat |
24899133 |
T |
|
| Q |
210 |
agcatccgagagcgaaacaaatagacggtgtatcgaatcggccggcgctgttgagttcttagcatcaatagtaacaaaaaacaacacaagttgctcatct |
309 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
24899134 |
tgcttctgagagcgaaacaaatagacggtgtatcgaatcggctggcgctgtcgagtttttagcatcaatagtaacacaaaacaacacaagttgttcatct |
24899233 |
T |
|
| Q |
310 |
tcatgtttagcaacagaattaattgaagctagttttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctatca |
409 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
24899234 |
tcatgttcagcaacagaattaattgaagctagctttgatgatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctataa |
24899333 |
T |
|
| Q |
410 |
acatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctctaatgagattattacaaaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || || || |
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|
| T |
24899334 |
acatcctttacaatcttcaattatcagaacaaggtttgaaaactctcttaaacttcaaaaatggagaatttttagactctttaattttattttttcataa |
24899433 |
T |
|
| Q |
510 |
aggtaactacgattcaagaacatacgcagtttttctgttgaaatctatgtcaaaagt |
566 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
24899434 |
gggtaactacgattcaagaacatacgcagtttttttgttgaaatctatttcaaaagt |
24899490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 349 - 566
Target Start/End: Original strand, 5284950 - 5285163
Alignment:
| Q |
349 |
gatgatgatgttgaaggttttgcttttgacttcaaaataggtgcagaagatgaagctatcaacatcctttacaatcttcaattatcagaacaaggtttga |
448 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||| |
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|
| T |
5284950 |
gatgatgacgttgaag-ttttgcttttgagttcaaaataggtgcagaggatgaagctatagacatcctttacaatcttcaattatcagaaaaatgttt-- |
5285046 |
T |
|
| Q |
449 |
aaactctcttaaacttcaaaaatggagaatttttagactctctaatgagattattacaaaaaggtaactacgattcaagaacatacgcagtttttctgtt |
548 |
Q |
| |
|
||| ||||| ||||| |||||| ||||||||||||||||| ||||||||| || || ||||||||| |||||||||||| | ||| |||| |||| |
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|
| T |
5285047 |
taacactctttaacttaaaaaatagagaatttttagactcttcaatgagatttttctaagcgggtaactacaattcaagaacatgcacag-ttttatgtt |
5285145 |
T |
|
| Q |
549 |
gaaatctatgtcaaaagt |
566 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
5285146 |
gaaatctatatcaaaagt |
5285163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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