View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_low_8 (Length: 403)
Name: NF16555_low_8
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 9172866 - 9172562
Alignment:
| Q |
1 |
tttcccataaacagcccacctaggattcctagcctctaccctctcatcactcaattcatctaattctctttccttctttttctcagcaaaacaaaaactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9172866 |
tttcccataaacagcccacctaggattcctagcctctaccctctcatcactcaattcatctaattctctttccttctttttctcagcaaaacaaaaactc |
9172767 |
T |
|
| Q |
101 |
ggaaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaaccctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9172766 |
ggaaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaacccac |
9172667 |
T |
|
| Q |
201 |
ttttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttcttctttactattaaactcaatctcttgagctatcttaggctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | |
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| T |
9172666 |
ttttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttcttctttactattaaactcaaactcttgagctatcttacgccg |
9172567 |
T |
|
| Q |
301 |
ttctt |
305 |
Q |
| |
|
||||| |
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|
| T |
9172566 |
ttctt |
9172562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 218 - 382
Target Start/End: Complemental strand, 9172604 - 9172440
Alignment:
| Q |
218 |
ttactattaaactcaaactcttgagctatcttacgccgttcttctttactattaaactcaatctcttgagctatcttaggctgttcttttctccttatgt |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
9172604 |
ttactattaaactcaaactcttgagctatcttacgccgttcttctttactattaaactcaatctcttgagctatcttaggctgttctttcttcgttatgt |
9172505 |
T |
|
| Q |
318 |
ttatccctgcttgatcttctttccatttaccaggaacaagattctctaactttatcactgtctgt |
382 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9172504 |
ttatccctgcttgaacttctttccatttaccaggaacaagattctcggactttatcactgtctgt |
9172440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 8653449 - 8653606
Alignment:
| Q |
103 |
aaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaaccctctt |
202 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||| |||||||||| |
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| T |
8653449 |
aaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagccttatactcattcaaatccatatccctcaaaggaatcaaccctctt |
8653548 |
T |
|
| Q |
203 |
ttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttctt |
260 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
8653549 |
ttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgttctt |
8653606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 8653562 - 8653681
Alignment:
| Q |
261 |
ctttactattaaactcaatctcttgagctatcttaggctgttcttttctccttatgtttatccctgcttgatcttctttccatttaccaggaacaagatt |
360 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||||||| || ||||||||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
8653562 |
ctttactattaaactcaatctcttgtgctatcttacgccgttctttcttcgttatgtttatctctgcttgaacttctttccatttatcaggaacaagatt |
8653661 |
T |
|
| Q |
361 |
ctctaactttatcactgtct |
380 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
8653662 |
ctcggactttatcactgtct |
8653681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 8653350 - 8653396
Alignment:
| Q |
4 |
cccataaacagcccacctaggattcctagcctctaccctctcatcac |
50 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||||||||||||| |
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|
| T |
8653350 |
cccataaacagcccatctaggattcctaggcactaccctctcatcac |
8653396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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