View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16555_low_9 (Length: 396)

Name: NF16555_low_9
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16555_low_9
NF16555_low_9
[»] chr5 (13 HSPs)
chr5 (1-378)||(3215521-3215898)
chr5 (2-379)||(3207586-3207963)
chr5 (1-379)||(3201611-3201989)
chr5 (75-366)||(3219101-3219392)
chr5 (239-366)||(3224189-3224317)
chr5 (97-360)||(3179008-3179271)
chr5 (97-360)||(3239569-3239832)
chr5 (97-207)||(3220537-3220647)
chr5 (97-192)||(3230770-3230865)
chr5 (260-371)||(3230933-3231044)
chr5 (260-371)||(3220700-3220811)
chr5 (97-192)||(3225522-3225617)
chr5 (260-371)||(3225685-3225796)
[»] chr1 (2 HSPs)
chr1 (255-291)||(46215262-46215298)
chr1 (259-310)||(139416-139467)
[»] chr4 (1 HSPs)
chr4 (344-380)||(19422809-19422845)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 3215521 - 3215898
Alignment:
Q  1 tgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3215521 tgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaa 3215620  T
Q  101 ccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3215621 ccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaata 3215720  T
Q  201 aatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3215721 aatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagacca 3215820  T
Q  301 atctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacctgaaatgatgtt 378  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3215821 atctggatgagagtttttcaacagagcagcaattccactgagatgtggacaagacattgaggtacctgaaatgatgtt 3215898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 379
Target Start/End: Original strand, 3207586 - 3207963
Alignment:
Q  2 gatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaac 101  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||    
T  3207586 gatggataattaagctgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataattcaaac 3207685  T
Q  102 cacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaataa 201  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||     
T  3207686 cacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcatttgcttttgaagggttgacatgtccagcaccagtggcaaatac 3207785  T
Q  202 atcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagaccaa 301  Q
    ||||||||||  || |||||||||||||||||  || |||||||||||||| | || |||||||||||||||||| |||||||||||||| |||||||||    
T  3207786 atcagctggtagaattctttggtccaaaataggcttaccttgaagattaacctgattagcagttgtcatgattgcggattttatagcagctggagaccaa 3207885  T
Q  302 tctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacctgaaatgatgtta 379  Q
    |||||||||||||||||||||| ||||||||| || || ||||| ||||| |||||||||||||||||||| ||||||    
T  3207886 tctggatgagagtttttcaacaaagcagcaatgccactaagatgaggacatgacattgaggtacctgaaattatgtta 3207963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 3201611 - 3201989
Alignment:
Q  1 tgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaa 100  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||| ||||||| |||||||||    
T  3201611 tgatgggtaattaagttgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagtataattcaaa 3201710  T
Q  101 ccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaata 200  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  3201711 ccacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcgtttgcttttgaagggttaacatgtccagcaccagtggcaaata 3201810  T
Q  201 aatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagacca 300  Q
     ||||||||||  ||| ||||||||||||||||  || || || |||||||| | || |||||| ||||||||||||||||||||||| || || |||||    
T  3201811 catcagctggtagaagcctttggtccaaaataggcttaccatggagattaacatgattagcagtcgtcatgattgctgattttatagctgctggtgacca 3201910  T
Q  301 atctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacctgaaatgatgtta 379  Q
    ||||||||| ||||||||||||| ||||||||| || || ||||| ||||||||||| |||||||||| ||| ||||||    
T  3201911 atctggatgcgagtttttcaacaaagcagcaatgccactaagatgaggacaagacatcgaggtacctgcaattatgtta 3201989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 75 - 366
Target Start/End: Original strand, 3219101 - 3219392
Alignment:
Q  75 caacatgtctatcagtgtaattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggtt 174  Q
    |||| ||| ||||||| ||||||||||||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||| || ||||    
T  3219101 caacttgtatatcagtataattcaaaccacccaagtaaggaacaatgtcatttggttcaatgtcataaacaagtcctggatcgtttgctttcaaatggtt 3219200  T
Q  175 gacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgatt 274  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  3219201 gacatatccagcaccagtggcaaataaatcagctggtttaagcctttggtctaaaatagcttttccttgaagattaaactcataagcagttgtcatgatt 3219300  T
Q  275 gctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattgaggtacc 366  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||||||  |||||||   ||||||||||||||||||    
T  3219301 gctgattttatagcagcgggagaccgatctggatgagaatttttcaacagtgctgcaattccattgagatgaaaacaagacattgaggtacc 3219392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 239 - 366
Target Start/End: Original strand, 3224189 - 3224317
Alignment:
Q  239 ccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttt-tcaacagagcagcaattccg 337  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||||   ||||||||||||||||| |||||| |||||||  | ||||||||     
T  3224189 ccttgaagattaacctcatatgcagttgtcatgattgccgattttatagcagacagagaccaatctggatgatagttttatcaacagtactgcaattcca 3224288  T
Q  338 ctgagatgtggacaagacattgaggtacc 366  Q
    |||||||| | ||||||||||||||||||    
T  3224289 ctgagatgagaacaagacattgaggtacc 3224317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 360
Target Start/End: Complemental strand, 3179271 - 3179008
Alignment:
Q  97 caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca 196  Q
    |||||||||||  |||||||| ||||| | ||||| ||||||||||||||| || ||||| || |||||   ||| || |||||||| |||||||| |||    
T  3179271 caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca 3179172  T
Q  197 aataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggag 296  Q
    || | |||||| |||  ||||||||| ||||| ||||   | ||    || || |    || ||||||||||||||||||||||||||| ||||| || |    
T  3179171 aaaacatcagcaggtgaaagtctttgatccaatataggaatcccgccgaggttgagagtattagcagttgtcatgattgctgattttattgcagctggcg 3179072  T
Q  297 accaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattga 360  Q
    ||||||| ||||||||  |||| | ||  |||||||| || |||||||| ||||||||||||||    
T  3179071 accaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacattga 3179008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 360
Target Start/End: Original strand, 3239569 - 3239832
Alignment:
Q  97 caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca 196  Q
    |||||||||||  |||||||| ||||| | ||||| ||||||||||||||| || ||||| || |||||   ||| || |||||||| |||||||| |||    
T  3239569 caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca 3239668  T
Q  197 aataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggag 296  Q
    || | |||||| |||  ||||||||| ||||| ||||   | ||    || || |    || ||||||||||||||||||||||||||| ||||| || |    
T  3239669 aaaacatcagcaggtgaaagtctttgatccaatataggaatcccgccgaggttgagagtattagcagttgtcatgattgctgattttattgcagctggcg 3239768  T
Q  297 accaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattga 360  Q
    ||||||| ||||||||  |||| | ||  |||||||| || |||||||| ||||||||||||||    
T  3239769 accaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacattga 3239832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 3220537 - 3220647
Alignment:
Q  97 caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca 196  Q
    |||||||||||  |||||||||||||| | ||||||||||||||||||||| || ||||| || |||||   ||| || |||||||| |||||||| |||    
T  3220537 caaaccacacagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca 3220636  T
Q  197 aataaatcagc 207  Q
    || | ||||||    
T  3220637 aaaatatcagc 3220647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 3230770 - 3230865
Alignment:
Q  97 caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt 192  Q
    ||||||||| |  |||||||||||||| | ||||||||||||||||||||| || ||||| || |||||  |||| || |||||||| ||||||||    
T  3230770 caaaccacaaagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaaaaggattaacatgtcctgcaccagt 3230865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 3230933 - 3231044
Alignment:
Q  260 gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattg 359  Q
    ||||||||||||||||||||||||||||| || || |||||||| || |||||  |||| | ||  |||||||| || || || || |||||||||||||    
T  3230933 gcagttgtcatgattgctgattttatagcggctggcgaccaatcagggtgagaacttttgatcaatgcagcaataccacttaggtgaggacaagacattg 3231032  T
Q  360 aggtacctgaaa 371  Q
    | ||||| ||||    
T  3231033 aagtaccggaaa 3231044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 3220700 - 3220811
Alignment:
Q  260 gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattg 359  Q
    ||||||||||||||||||||||||||||| || || |||||||| || |||||  |||| | ||  |||| ||| || || || || |||||||||||||    
T  3220700 gcagttgtcatgattgctgattttatagcggctggtgaccaatcagggtgagaacttttgatcaatgcagaaataccacttaggtgaggacaagacattg 3220799  T
Q  360 aggtacctgaaa 371  Q
    | ||||| ||||    
T  3220800 aagtaccggaaa 3220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 3225522 - 3225617
Alignment:
Q  97 caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt 192  Q
    ||||||||| |  |||||||||||||| | ||||||||||||||||||||| || ||||| || |||||   ||| || |||||||| ||||||||    
T  3225522 caaaccacatagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagt 3225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 3225685 - 3225796
Alignment:
Q  260 gcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaacagagcagcaattccgctgagatgtggacaagacattg 359  Q
    ||||||||||||||||| ||||||||||| || || |||||||| ||||||||  |||| | ||  |||||||| || || || || ||||||||||| |    
T  3225685 gcagttgtcatgattgccgattttatagcggctggtgaccaatcaggatgagaacttttgatcaatgcagcaataccacttaggtgaggacaagacatcg 3225784  T
Q  360 aggtacctgaaa 371  Q
    | ||||| ||||    
T  3225785 aagtacccgaaa 3225796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 46215298 - 46215262
Alignment:
Q  255 cataagcagttgtcatgattgctgattttatagcagc 291  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46215298 cataagctgttgtcatgattgctgattttatagcagc 46215262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 139416 - 139467
Alignment:
Q  259 agcagttgtcatgattgctgattttatagcagcgggagaccaatctggatga 310  Q
    ||||||||||||||| || ||||||||||| || || |||||||||||||||    
T  139416 agcagttgtcatgatagcggattttatagctgcaggtgaccaatctggatga 139467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 19422845 - 19422809
Alignment:
Q  344 tgtggacaagacattgaggtacctgaaatgatgttat 380  Q
    ||||||||||||||||| || ||||||||||||||||    
T  19422845 tgtggacaagacattgatgttcctgaaatgatgttat 19422809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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