View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16556_high_1 (Length: 499)
Name: NF16556_high_1
Description: NF16556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16556_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Complemental strand, 1239542 - 1239075
Alignment:
| Q |
10 |
gcagagagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaattaagttaatatctcactgagtttcat |
109 |
Q |
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| T |
1239542 |
gcagagagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaatcaagttaatatctcactgagtttcat |
1239443 |
T |
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| Q |
110 |
gcatagcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttcta |
209 |
Q |
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| T |
1239442 |
gcatagcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttcta |
1239343 |
T |
|
| Q |
210 |
tagtaacaacgtagatgatgacgtgtaagtaaccaaacaaacgaacactgccgctttaattcacctttggaat---cttcattcactataaatacagaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1239342 |
tagtaacaacgtagatgatgacgtgtaagtaaccaaacaaacaaacactgccgctttaattcacctttggaatcttcttcattcactataaatacagaca |
1239243 |
T |
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| Q |
307 |
cacccttctttgtttcatttcatctcatgcatgtgtcacttaatattcactctcttaattaagtgaaatttcaacgtaaatatatatnnnnnnnnnnnnn |
406 |
Q |
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| T |
1239242 |
cacccttctttgtttcatttcatctcatgcatgtgtcacttaatattcactctcttaattaagtgaaatttcaacgtaaatatata------cacacaca |
1239149 |
T |
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| Q |
407 |
nnntcgtggtgatgatgatgaagaacaatttgtgtaatgtagtgcaaggtttgaagccaacgttgttaatggtt |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1239148 |
cactcgtggtgatgatgatgaagaacaatttgtgtaatgtagtgcaaggtttgaagccaacgttgttaatggtt |
1239075 |
T |
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