View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16556_low_1 (Length: 698)
Name: NF16556_low_1
Description: NF16556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16556_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 11 - 680
Target Start/End: Complemental strand, 43325684 - 43325015
Alignment:
| Q |
11 |
gtgaaatgaaggcactaaaattatgattctagttataaaacttggtatgattatcctgttacagaaggctattatgtgtctttttcggtgtgaataaggc |
110 |
Q |
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| T |
43325684 |
gtgaaaagaaggcactaaaattatgattctagttataaaacttggtatgattatcctgttacagaaggctattaagtgtctttttcggtgtgaataaggc |
43325585 |
T |
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| Q |
111 |
actaatttctaattctagttatgtgtggttttagtaatgtctaatgtggtgttttatttatgtatttctgactttggggagcaatgtatcatataactat |
210 |
Q |
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| T |
43325584 |
actaatttctaattctagttatgtgtggttttagtaatgtctaatgtggtgttttatttatgtatttctgactttggggagcaatgtatcatataactat |
43325485 |
T |
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| Q |
211 |
gatctgtggatctttgttggaaaaataaaagcactggtttgtattttcactatttctcttctttggcaatgtcaaaattttattatcttttgcatttgga |
310 |
Q |
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| T |
43325484 |
gatctgtagatctttgttggaaaaataaaagcactggtttgtattttcactatttctcttctttggcaatgtcaaaattttattgtcttttgcatttgga |
43325385 |
T |
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| Q |
311 |
aattggcaagtacagcaaatagttgtaaccgttttgattggcactatgttattggttgaaaaatgtaagatataaaaataaaaactagtttggggttgtt |
410 |
Q |
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| T |
43325384 |
aattggcaagtacagcaaatagttgtaaccgttttgattggcactatgttattggttgaaaaatgtaagctataaaaataaaaactagtttggggttgtt |
43325285 |
T |
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| Q |
411 |
catggcccttttgagaaggggttattcatggaagccagatgctcatggtaacaaactaccaacaaaacttcttcccattagcataaagtttaatatggat |
510 |
Q |
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| T |
43325284 |
catggcccttttgagaaggggttattcatggaagccagatgctcatggtaacaaactaccaacaaaacttcttcccattagcatgaagtttaatatggat |
43325185 |
T |
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| Q |
511 |
tatgagcaagttttataaaacacggttctttaatgacaattgacaagcaatatattctatacaagaaatacttatggggctctagttgttaggttcattt |
610 |
Q |
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| T |
43325184 |
tatgagcaagttttataaaacacggttctttaatgacaattgacaagcaatatattctatacaagaaatacttatggggctctagttgttaggttcattt |
43325085 |
T |
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| Q |
611 |
ggtaatggtatatcacatcacataatatccaaatcactgttttttaataaaagagattctacattagtca |
680 |
Q |
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| T |
43325084 |
ggtaatggtatatcacatcacataatatccaaatcactgttttttaataaaagagattctacattagtca |
43325015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 43325734 - 43325680
Alignment:
| Q |
50 |
acttggtatgattatcctgttacagaaggctattatgtgtctttttcggtgtgaa |
104 |
Q |
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| T |
43325734 |
acttggtacgattatcctaatacagaaggctactatgtgtctttttcgatgtgaa |
43325680 |
T |
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