View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16556_low_2 (Length: 565)
Name: NF16556_low_2
Description: NF16556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16556_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 65 - 554
Target Start/End: Original strand, 2354370 - 2354872
Alignment:
| Q |
65 |
attgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggttattcaagttttggcttttgagggaaccaaaagttct |
164 |
Q |
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| T |
2354370 |
attgggagcaggccttaaatttggccaaaacaaaatataaagacgcaaaaggacctcattggttattcaagttttggcttttgagggaaccaaaagttct |
2354469 |
T |
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| Q |
165 |
ggcgnnnnnnnnnnnnnnnnnnnnctgtccacacccatattagcttcttaattactagttcatcacaaaattaaaaaggagaatatccttttcattttag |
264 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2354470 |
ggcgttttcttttgttttatttttctgtccacacccatattagcttcttaattactagttcatcacaaaattaaaaaggagaatatccttttcattttag |
2354569 |
T |
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| Q |
265 |
ttttttcttacaaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcatccttcaaatgaatccc--------------ggtgagg |
350 |
Q |
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| T |
2354570 |
ttttttcgtactaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcatctttcaaatgaatccctaactatattagtcggtgagg |
2354669 |
T |
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| Q |
351 |
gatggactatgtcacgactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttaatattttttctctcattca |
450 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2354670 |
-atggactatgtcacaactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttcatattttttctctcattca |
2354768 |
T |
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| Q |
451 |
gcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatatggttttcgattttaatcatgttct |
550 |
Q |
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| T |
2354769 |
gcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatattgttttcgattttaatcatgttct |
2354868 |
T |
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| Q |
551 |
ctct |
554 |
Q |
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|||| |
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| T |
2354869 |
ctct |
2354872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 2354323 - 2354352
Alignment:
| Q |
18 |
ccacttgacttgttagagatccctgtcttg |
47 |
Q |
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| T |
2354323 |
ccacttgacttgttagagatccctgtcttg |
2354352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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