View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16557_high_12 (Length: 387)
Name: NF16557_high_12
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 37715061 - 37715401
Alignment:
| Q |
43 |
tgaaatacagaaaatatataagagggcatatatatataccatttgatcacaatttgaaaaagtttaaatcgctatgaaaatttagaaatgaaaaaatgca |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37715061 |
tgaaatacagaaaatatataagagggcatatatatataccatttgatcacaatttgaaaaagtttaaatcgctatgaaaatttagaaatgaaaaaatgca |
37715160 |
T |
|
| Q |
143 |
atatccatctctaattatgtggcaagtattagagacgaaaaatgtactaaccaatgttaaatttttcgtctctaatttttgtcaatatttcaactgtttt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37715161 |
atatccatctctaattatgtggcaagtattagagacgaaaaatgtactaaccaatgttaaatttttcgtctctaatttttgtcgatatttcaactgtttt |
37715260 |
T |
|
| Q |
243 |
tactttttagtagtgattgttactgaagtcattcaattcaat-tttttcaaagaaaagtccgacttttttcttcatttattccaacagaaaattnnnnnn |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37715261 |
tactttttagtagtgattgttactgaagtcattcaattcaatctttttcaaagaaaagtccgacttttttcttcatttattccaacagaaaattaaaaaa |
37715360 |
T |
|
| Q |
342 |
ntaaatttct--agatacgactaattaaaaatcaacctttg |
380 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37715361 |
ataaatttctagagatacgactaattaaaaatcaacctttg |
37715401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University