View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_high_13 (Length: 386)
Name: NF16557_high_13
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 34 - 369
Target Start/End: Complemental strand, 42595389 - 42595054
Alignment:
| Q |
34 |
accaacaagatcattacagttctgataatatatggttagatatactatgtgagtatgtgatatcattaagatttattacagattactcacaaatgcagat |
133 |
Q |
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| T |
42595389 |
accaacaagatcattacagttctgataatatatggttagatatactatgtgagtatgtgatatcattaagatttattacagattactcacaaatgcagat |
42595290 |
T |
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| Q |
134 |
atcatgtggatcgagttaaatgcatgaatgcacagatcaaatattggtggacaaaaatcgaaataaaaaagccagcagatttatgtttcctaattatcat |
233 |
Q |
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| T |
42595289 |
atcatgtggatcgagttaaatgcatgaatgcacagatcaaatattggtggacaaaaatcgaaataaaaaagccagcagatttatgtttcctaattatcat |
42595190 |
T |
|
| Q |
234 |
tcacaatggatccccaatgtggcgcattatattctttaatagccaacagatttgcaaaatattgatgggtttatttcaatcatgttgggtagctacaaat |
333 |
Q |
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| T |
42595189 |
tcacaatggatccccaatgtggcgcattatattctttaatagccaacagatttgcaaaatattgatgggtttatttcaatcatgttgggtagctacaaat |
42595090 |
T |
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| Q |
334 |
ttggactctaaaataagtataaagcattaagcatat |
369 |
Q |
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| T |
42595089 |
ttgaactctaaaataagtataaagcattaagcatat |
42595054 |
T |
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