View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_high_3 (Length: 558)
Name: NF16557_high_3
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 7884031 - 7884307
Alignment:
| Q |
15 |
aaaaagaggtcatgacaattaactgtttggccaaaacgtaagtaaagcttgacaaacaagtcaatatttgaacttgaattttttcgaatgattaagttta |
114 |
Q |
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| T |
7884031 |
aaaaaggggtcatgacaattaactgtttagccaaaacgtaagtaaagcttgacaaataagtcaatatttgaacttgaattttttcgaatgattatgttta |
7884130 |
T |
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| Q |
115 |
atcatttggtacatggagtatgaaagaatagatgataaatattaccaaatattacaattgaagtaaattaagatgaaagttgaaatgatattttataatc |
214 |
Q |
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| T |
7884131 |
atcatttggtacatggagtatgaaagaatagatgataaatattacaaaatattacaattgaagtaaattaagatgaaagttgaaatgatattttataatc |
7884230 |
T |
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| Q |
215 |
atggaaattgaatgaattaatacagatggagaggaatattgacttggtatatggaggaggaagcattggtttgatgg |
291 |
Q |
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| T |
7884231 |
atggaaattgaatgaattaatacaggtggagaggaatattgacttggtatatggaggaggaagcattggtttgatgg |
7884307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 283 - 553
Target Start/End: Original strand, 7884327 - 7884613
Alignment:
| Q |
283 |
gtttgatggaggaagccaagtcatagggtaactaatccacctccacccttttct-tgcttctttatttgtgattatgatcaattttcctattgttgtagg |
381 |
Q |
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| T |
7884327 |
gtttgatggaggaagccaaatcatagggtaactaatccacctccacccttttctctgcttctttatttgtgattatgatcaattttcctattgttgtagg |
7884426 |
T |
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| Q |
382 |
gtcatccctaagactcttgtaccaagagagg---------------tattttgttttaaccnnnnnnnttatggctatgtttttatgagtatgaatggaa |
466 |
Q |
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| T |
7884427 |
gtcatccctaagactcttgtaccaagagaggtattttgttcaattttattttgttttaaccaaaaaaattatggctatgtttttatgagtatgaatggaa |
7884526 |
T |
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| Q |
467 |
ctcaatatctcaagatttacgatatccgcacattttgtacaccaactacttgcgttaaaccctgtggtgaatcatgactatgttttt |
553 |
Q |
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| T |
7884527 |
ctcaatatctcaagatttacgatatccgcacactttgtacaccaactacttgcgttaaaccctgtggtgaatcatgactatgttttt |
7884613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 7899836 - 7899990
Alignment:
| Q |
136 |
gaaagaatagatgataaatattaccaaatattacaattgaagtaaattaagatgaaagttgaaatgatattttataatcatggaaattgaatgaattaat |
235 |
Q |
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| T |
7899836 |
gaaagaata-atgctaaatataactaaatattacaattgaagtaaattaagatgaaagttgaaatgatattttataatcatggaaattgaatgaattaat |
7899934 |
T |
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| Q |
236 |
acagatggagaggaatattgacttggtatatggaggaggaagcattggtttgatgg |
291 |
Q |
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| T |
7899935 |
acaggtggagaggaatattgacttggtatatggaggaggaaacattggtttgatgg |
7899990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 283 - 399
Target Start/End: Original strand, 7900010 - 7900127
Alignment:
| Q |
283 |
gtttgatggaggaagccaagtcatagggtaactaatccacctccacccttttct-tgcttctttatttgtgattatgatcaattttcctattgttgtagg |
381 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7900010 |
gtttgatggaggacgccaagtcatagggtaactaatccacccccacccttttctctgcttctttatttgtgattatgatcaattttcctattgttgtagg |
7900109 |
T |
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| Q |
382 |
gtcatccctaagactctt |
399 |
Q |
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| T |
7900110 |
gtcatccctaagactctt |
7900127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 53032824 - 53032863
Alignment:
| Q |
252 |
attgacttggtatatggaggaggaagcattggtttgatgg |
291 |
Q |
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| T |
53032824 |
attgacttggtatatggaggaggaagcataggattgatgg |
53032863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 21625315 - 21625357
Alignment:
| Q |
249 |
aatattgacttggtatatggaggaggaagcattggtttgatgg |
291 |
Q |
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| T |
21625315 |
aatattgatttggtttatggaggaggcagcattggtttgatgg |
21625357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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