View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_high_4 (Length: 521)
Name: NF16557_high_4
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 130 - 506
Target Start/End: Original strand, 4411604 - 4411981
Alignment:
| Q |
130 |
caaacaaaactgggaattggacaagtcttggcttcatcatctgatgtgaagtatttctctctaaatttaatcaagacgtgtggaatctcaatctcaaatt |
229 |
Q |
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| T |
4411604 |
caaacaaaactgggaattggacaagtcttggcttcatcatctgatgtgaagtatttctctctaaatttaatcaagacgtgtggaatctcaatctcaaatt |
4411703 |
T |
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| Q |
230 |
gagtacaaacagataatacttctttagccaaattcaagactaggacatgtgagacaaacgttttaatctactctttgtccagagttttctcattgagact |
329 |
Q |
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| T |
4411704 |
gagtacaaacagataatacttctttagccaaattcaagactaggacatgtgagacaaacgttttaatctactctttgtccagaggtttctcattgagact |
4411803 |
T |
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| Q |
330 |
aattcttgtgccgatgctatagctaatttggcctgtgagggtggctcttttttgattatttatgaacaatatcatgttctgatgagatcatgttttttag |
429 |
Q |
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| T |
4411804 |
aattcttgtgtcgatgctctagctaatttggtctctgagggtggctcttttttgattatttatgaacaatatcatgttctgatgagatcatgttttttag |
4411903 |
T |
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| Q |
430 |
ttgattatg-ttggtattgcaacacctcgtttaattaagcattaagttttctttcttttgggctaaagctctcttgta |
506 |
Q |
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| T |
4411904 |
ttgattatgtttggtattgcaacacctcgtttaattaagcattaagttttctttcttttgggctaaagctctcttgta |
4411981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 4411491 - 4411535
Alignment:
| Q |
17 |
agatttgaaatcaaataaaaacattttttgaattatatgtcgtgt |
61 |
Q |
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| T |
4411491 |
agattggaaatcaaataaaaacattttttgaattatatgtcgtgt |
4411535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 4085611 - 4085429
Alignment:
| Q |
328 |
ctaattcttgtgccgatgctatagctaatttggcctgtgagggtggctcttttttgattatttatgaacaatatcatgttctgatgagatcatgtttttt |
427 |
Q |
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|||||||| |||| |||||| ||||||| ||||| | ||| |||| ||||| |||||||||||||||||||| || ||||| |||||||| ||||||||| |
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| T |
4085611 |
ctaattctcgtgcagatgctctagctaacttggcgtatgatggtgactcttctttgattatttatgaacaatgtcctgttcagatgagattatgtttttt |
4085512 |
T |
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| Q |
428 |
a-gttgattatgttggtattgcaacacctcgtttaattaagcattaagttttctttcttttgggctaaagctctcttgtactc |
509 |
Q |
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| T |
4085511 |
ttgctgattatgttggtgttgcaacacctcgtttaattaggcgttaagttttctttcttttgggctaaggccctcttgtactc |
4085429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 330 - 494
Target Start/End: Complemental strand, 3575223 - 3575059
Alignment:
| Q |
330 |
aattcttgtgccgatgctatagctaatttggcctgtgagggtggctcttttttgattatttatgaacaatatcatgttctgatgagatcatgttttttag |
429 |
Q |
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||||||||||| ||| | ||||||||||| | ||||| |||||||||| || |||| |||||||| ||| || ||||| |||||||||| ||||||| |
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| T |
3575223 |
aattcttgtgcatatgttctagctaatttgacgtgtgatggtggctcttcttcgattgtttatgaataatgtcttgttcaaatgagatcatattttttaa |
3575124 |
T |
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| Q |
430 |
ttgattatgttggtattgcaacacctcgtttaattaagcattaagttttctttcttttgggctaa |
494 |
Q |
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| T |
3575123 |
ctgattatgttggtgttgcaacacctcgtttaattagacgctaagttttctttcttttaggctaa |
3575059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 467
Target Start/End: Complemental strand, 50657423 - 50657286
Alignment:
| Q |
330 |
aattcttgtgccgatgctatagctaatttggcctgtgagggtggctcttttttgattatttatgaacaatatcatgttctgatgagatcatgttttttag |
429 |
Q |
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| T |
50657423 |
aattcttgtgcagatgtactggctaacttggtgtgtgacggtggctcttctttgattaattatgaacaatgtcctattcagatgagatcatgttttttag |
50657324 |
T |
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| Q |
430 |
ttgattatgttggtattgcaacacctcgtttaattaag |
467 |
Q |
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| T |
50657323 |
ctaattatgttagtgttgcaacacctcgcttaattaag |
50657286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 414 - 508
Target Start/End: Complemental strand, 30022513 - 30022419
Alignment:
| Q |
414 |
agatcatgttttttagttgattatgttggtattgcaacacctcgtttaattaagcattaagttttctttcttttgggctaaagctctcttgtact |
508 |
Q |
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| T |
30022513 |
agatcatgtcttttagttgataatgttggtgttgcaacacctagtttaattaagtgttaagtttcctttcttttgggctaaagatctcttgtact |
30022419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 42604441 - 42604409
Alignment:
| Q |
267 |
gactaggacatgtgagacaaacgttttaatcta |
299 |
Q |
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| T |
42604441 |
gactaggacatgtgagaaaaacgttttaatcta |
42604409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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