View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_high_6 (Length: 494)
Name: NF16557_high_6
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 44993115 - 44992698
Alignment:
| Q |
17 |
cagaataaagtcatataagtttacttgtgattatcccacctgttctatatctattaaaaagcaaagtgaaaacagaagaagcagaagatttccacatttt |
116 |
Q |
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| T |
44993115 |
cagaataaagtcatataagtttacttgtgattatcccacctgttctatatctattaaaaagtaaagtgaaaacagaagaagcagaagatttccacatttt |
44993016 |
T |
|
| Q |
117 |
attagctttgtatgctaatgtgtgtatcataatatatctgctgtagattctatggattcaacagcacatactggacagccaagtgggggtgattggcaag |
216 |
Q |
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| T |
44993015 |
attagctttgtatgctaatgtgtgtatcataatatatctgctgtagattctatggattcaacagcacatactggacagccaagtgggagtgattggcaag |
44992916 |
T |
|
| Q |
217 |
aagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggcaaattgggtttatcaactgaaaattgtcaaatatatggcttttgtgcc |
316 |
Q |
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| T |
44992915 |
aagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggcaaattgggtttatcaactgaaaattgtcaaatatatggcttttgtgcc |
44992816 |
T |
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| Q |
317 |
cagatttatcttaattg--nnnnnnnntggagacgaatccaaactttttgctttttatgtggttgattcttatccttcatctaatgtatgaaaacattca |
414 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44992815 |
cagatttatcttaattgaaaaaaaaaatggagacgaatccaaactttttgctttttatgtggttgattcttatccttcatctaatgtatgaaaacgttca |
44992716 |
T |
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| Q |
415 |
ggctgcatcaataatgaa |
432 |
Q |
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| T |
44992715 |
ggctgcatcaataatgaa |
44992698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 102 - 331
Target Start/End: Complemental strand, 44981512 - 44981284
Alignment:
| Q |
102 |
agatttccacattttattagctttgtatgctaatgtgtgtatcataatatatctgctgtagattctatggattcaacagcacatactggacagccaagtg |
201 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| || ||||| |||| || |
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| T |
44981512 |
agatttccacattttattagccttgtatgctaatgtgtgtatcataatatatctt-tgtagattctctggattcagtagcacagaccggacaaccaaatg |
44981414 |
T |
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| Q |
202 |
ggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggcaaattgggtttatcaactgaaaattgtcaaata |
301 |
Q |
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| T |
44981413 |
gtggtgattggcaagaagaaatatatcaaaatgtattatgctactttctcatctttatttattgggtaaattggatttattaatagaaaattgacaaaca |
44981314 |
T |
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| Q |
302 |
tatggcttttgtgcccagatttatcttaat |
331 |
Q |
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| T |
44981313 |
aatgacttttgtgccaagaaatatcttaat |
44981284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 102 - 315
Target Start/End: Complemental strand, 44965306 - 44965088
Alignment:
| Q |
102 |
agatttccacattttattagctttgtatgctaatgtgtgta------tcataatatatctgctgtagattctatggattcaacagcacatactggacagc |
195 |
Q |
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| T |
44965306 |
agatttccacatttt-ttagctatgtatgcttatgtgtgtacatagttaatgatatatctgttgtagattctatggattcaacagcacagactggacaga |
44965208 |
T |
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| Q |
196 |
caagtgggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttcttgggcaaattgggtttatcaactgaaaattgt |
295 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||| | |||| ||||||| | |
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| T |
44965207 |
caagtgggggtgattggcaagaagaagtgtatcaaaaagtaatatgctactttctcaactttatttcttgggtaaattgggttgaacaacagaaaatttt |
44965108 |
T |
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| Q |
296 |
caaatatatggcttttgtgc |
315 |
Q |
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|||| | ||||||||||||| |
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| T |
44965107 |
caaacaaatggcttttgtgc |
44965088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 44980320 - 44980173
Alignment:
| Q |
164 |
ttctatggattcaacagcacatactggacagccaagtgggggtgattggcaagaagaagtatatcaaaaagtattatgctactttctcatctttatttct |
263 |
Q |
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|||| |||||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
44980320 |
ttctctggattcaactgcaaagactggaaagccaagtgggggtgattggcaagaagaagtatatcaaaaggtattatgctactttcttatctttatttct |
44980221 |
T |
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| Q |
264 |
tgggcaaattgggtttatcaactgaaaattgtcaaatatatggctttt |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44980220 |
tgggaaaattgggtttatcaactgaaaattgtcaaataaatggctttt |
44980173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 432
Target Start/End: Complemental strand, 44980112 - 44980021
Alignment:
| Q |
342 |
tggagacgaatccaaactttttgctttttatgtggt-tgattcttatccttcatctaatgtatgaaaacattcaggctgcatcaataatgaa |
432 |
Q |
| |
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|||||||||||||| ||||||||||||| || || |||||||||||||||||||||| || ||||| ||| ||||||||| |||||||| |
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| T |
44980112 |
tggagacgaatccacactttttgcttttcttgggggatgattcttatccttcatctaatataggaaaagatttgggctgcatctataatgaa |
44980021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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