View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_high_7 (Length: 493)
Name: NF16557_high_7
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 341 - 469
Target Start/End: Complemental strand, 256070 - 255942
Alignment:
| Q |
341 |
tataattcaccatgcagaaaattttgagaaagaaaaagagctatagacctgttcgtttgggtttgccatcatcatctacaagagcaccgtcatttgcaac |
440 |
Q |
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| T |
256070 |
tataattcaccatgcagaaaattttgagaaagaaaaagagctatagacctgttcgtttgggtttgccatcatcatctaaaagagcaccgtcatttgcaac |
255971 |
T |
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| Q |
441 |
tactgctgtatcagcctccttctttcttt |
469 |
Q |
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| T |
255970 |
tactgctatatccacctccttcttccttt |
255942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 339 - 469
Target Start/End: Original strand, 228418 - 228550
Alignment:
| Q |
339 |
attataattcaccatgcagaaaattttgagaaagaaaaagagctat--agacctgttcgtttgggtttgccatcatcatctacaagagcaccgtcatttg |
436 |
Q |
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| T |
228418 |
attatatttcaccaagcataaaattttgcgaaagaaaaagagttatgtatacctgttcgtatgggcttgccatcatcatctacaagagcaccgtcatttg |
228517 |
T |
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| Q |
437 |
caactactgctgtatcagcctccttctttcttt |
469 |
Q |
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| T |
228518 |
caactactgctatatccacctccttcttccttt |
228550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 228136 - 228243
Alignment:
| Q |
88 |
taacgaattcatggtgctattgaggaaattttatatatgtagatacaaccacatcaggtc------tgatttgtatattacatttcattggac-atttca |
180 |
Q |
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| T |
228136 |
taacgaaatcatggtgcttttgaggaaattttatatatgtagatacaaccacatcaggtcacattttgatttgtatattgcatttcattggacaatttaa |
228235 |
T |
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| Q |
181 |
atgagagc |
188 |
Q |
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| T |
228236 |
atgagagc |
228243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 256566 - 256495
Alignment:
| Q |
1 |
gctgccgtccataatgtccctgtggtttaaaaggaaaccaggtctgagttgagtgtatagatgaacttgcac |
72 |
Q |
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| T |
256566 |
gctgcggtccataatgtccctgtggtttaaaaggaaaccaggattgagttgagtgtatagatgaacttgcac |
256495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 256182 - 256124
Alignment:
| Q |
74 |
aatcaagaagaatttaacgaattcatggtgctattgaggaaattttatatatgtagatac |
133 |
Q |
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| T |
256182 |
aatcaagaagaatttaaggaattcatggtgctattga-gaaaatttatatacgtagatac |
256124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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