View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_high_9 (Length: 431)
Name: NF16557_high_9
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 30774511 - 30774161
Alignment:
| Q |
15 |
gagaagaaattataaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctg |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | ||||||||| || |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
30774511 |
gagaagaaattaacaaaatgattcaagaagctagagagtaccgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgctg |
30774412 |
T |
|
| Q |
115 |
catttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctaca |
214 |
Q |
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|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30774411 |
catttacaagttgaggaatggtctaaagattaaggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcactgatgcaattgcagtggctaca |
30774312 |
T |
|
| Q |
215 |
aatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatgaagaagcttgaaaatatgttggaagaccttgaagtaaagactg |
314 |
Q |
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| T |
30774311 |
aatttgcttgataagaataatcagcggaatgaaattcatgttctcgaagatcatatgaagaagcttgaaaatatgttgaaagaccttgaagtaaagactg |
30774212 |
T |
|
| Q |
315 |
gatagttttctttttcagcagttaggttgttaagtgttgtcctgctattgt |
365 |
Q |
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| T |
30774211 |
aatagttttctttttcagcagttaggttgataagtgttgtcttgcttttgt |
30774161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 8615969 - 8615635
Alignment:
| Q |
20 |
gaaattataaaaatgattcaagaagctagag-agtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcatt |
118 |
Q |
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||||||| |||| ||||||||||||| |||| ||||| | ||||||||| | |||| |||||||| | | ||||||||||| |||||||| ||||||| |
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| T |
8615969 |
gaaattaaaaaactgattcaagaagc-agaggagtaccgcgctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcatt |
8615871 |
T |
|
| Q |
119 |
tacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatt |
218 |
Q |
| |
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|||| |||||||||||||||||||| || ||| || |||||||||||||||||||||| | |||| ||||| |||||||| | ||||||||||||| |
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| T |
8615870 |
tacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaatt |
8615771 |
T |
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| Q |
219 |
tgcttgataagaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagcttgaaaatatgttggaagaccttgaagtaaagact-gga |
316 |
Q |
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||||||||| |||||| |||| || || ||||| | ||||||||||||||| ||||| |||| ||| ||||||||||||||||| | | |||||| | |
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| T |
8615770 |
tgcttgataggaataaccagcagagtg-aagtagaagttctcgaagatcatctgaaggagctcaaaagtatgttggaagaccttgtatttaagactaagc |
8615672 |
T |
|
| Q |
317 |
tagttttctttttcagcagttaggttgttaagtgttg |
353 |
Q |
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|||||| ||||||||||| |||| || |||||||||| |
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| T |
8615671 |
tagtttcctttttcagcaattagttttttaagtgttg |
8615635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 73 - 360
Target Start/End: Original strand, 8586673 - 8586960
Alignment:
| Q |
73 |
attcttaaggaagtctatggtaatgaatgcattagatggctgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatct |
172 |
Q |
| |
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|||| |||||||| ||| |||||||||| ||||||||| || |||||| ||| |||||||||||||||| || ||| | || ||||| || ||| |
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| T |
8586673 |
attcctaaggaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttct |
8586772 |
T |
|
| Q |
173 |
caaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatga |
272 |
Q |
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|||||| | |||||||||||| |||||||| || |||||||||||||||||||||||||||| ||| |||||| | ||||||| | |||||| ||| |
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| T |
8586773 |
caaaaagttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctga |
8586872 |
T |
|
| Q |
273 |
agaagcttgaaaatatgttggaagaccttgaagtaaagactggatagttttctttttcagcagttaggttgttaagtgttgtcctgct |
360 |
Q |
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|| ||||||| | ||||||||||||||| || |||| ||| ||||||||||| || |||||| || |||| ||||||| |||| |
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| T |
8586873 |
aggagcttgagagcatgttggaagaccttttggtcaagagtggctagttttctttccaagaagttagatttttaaatgttgtcttgct |
8586960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 28 - 326
Target Start/End: Original strand, 16662917 - 16663215
Alignment:
| Q |
28 |
aaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcatttacaggttg |
127 |
Q |
| |
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|||| ||||||||||||||| |||||| ||||||||| || |||| |||||||| | | |||||||||||||||||||| ||||||||||| ||| |
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| T |
16662917 |
aaaattgattcaagaagctaaggagtaccatgctgaagatgagaaattcctaaggaaggccaaggtaatgaatgcattagatgactgcatttacaaattg |
16663016 |
T |
|
| Q |
128 |
aggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgata |
227 |
Q |
| |
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|||||||||||||||| || | | || || |||||||| || | |||||| |||||||||||| |||||||| | ||||||| | |||||||| || |
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| T |
16663017 |
aggaatgctctaaagaataagaatgtcaaattaaagctttctttccaaaaaaataaaaagatcaatcatgcaattacggtggctaaagatttgcttcatg |
16663116 |
T |
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| Q |
228 |
agaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagcttgaaaatatgttggaagaccttgaagtaaagactggatagttttctt |
326 |
Q |
| |
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|||| || ||| |||||| ||||| ||||||| || |||||| ||||| ||||||| | ||||||||| |||||| | | ||||||| |||||||||| |
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| T |
16663117 |
agaagaaccaggggaatg-aagtagatgttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgtaatcaagactgtctagttttctt |
16663215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 15594292 - 15594081
Alignment:
| Q |
20 |
gaaattataaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcattt |
119 |
Q |
| |
|
||||||| |||||||||||||||||| || || | ||||||||| || |||| |||||||| | |||||||||||||||||||| ||| ||| |
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| T |
15594292 |
gaaattaaaaaaatgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgttt |
15594193 |
T |
|
| Q |
120 |
acaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaattt |
219 |
Q |
| |
|
||| |||||| |||||||| |||| || ||| || || ||||| || || ||| || || | | ||||||||||| ||||||| |||||||||||||||| |
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|
| T |
15594192 |
acaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagatcaatggtgcaattacagtggctacaaattt |
15594093 |
T |
|
| Q |
220 |
gcttgataagaa |
231 |
Q |
| |
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|||||||||||| |
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| T |
15594092 |
gcttgataagaa |
15594081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 4679628 - 4679679
Alignment:
| Q |
183 |
aaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataa |
234 |
Q |
| |
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|||||||||| ||||||||| ||||||| || || ||||||||||||||||| |
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|
| T |
4679628 |
aaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataa |
4679679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 28219097 - 28219049
Alignment:
| Q |
95 |
atgaatgcattagatggctgcatttacaggttgaggaatgctctaaaga |
143 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
28219097 |
atgaatgcattagatgactgcgtttacaagttgaggaatgctctaaaga |
28219049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 43743998 - 43743915
Alignment:
| Q |
92 |
gtaatgaatgcattagatggctgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaa |
175 |
Q |
| |
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||||||||||||||||||| || |||||| ||||||||||||| |||||| || ||| || || |||||||| || |||||| |
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| T |
43743998 |
gtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaagctttcttctcaa |
43743915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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