View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_10 (Length: 464)
Name: NF16557_low_10
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 24 - 442
Target Start/End: Complemental strand, 21116704 - 21116286
Alignment:
| Q |
24 |
ctgaatctccactaaatatattatgcctcttcaacagacttggcagtacaaccagctgcatatacaagaacaaactnnnnnnnttcacatgcacgcacaa |
123 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
21116704 |
ctgaatctccactaaatatattatgcctcttcaacagacttggcagtacaatcagctgcatatacaagaacaaattaaaaaaattcacattcacgcacaa |
21116605 |
T |
|
| Q |
124 |
agcgctatatacatggtatcgacattttgtgtgattcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccagacttacagaat |
223 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21116604 |
agcgctatatacatggtatcaacattttatgtgattcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccggacttacagaat |
21116505 |
T |
|
| Q |
224 |
ctgcagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaattgtacacaataaaacttgaaaaataaaattaagatgaatactcctaaga |
323 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21116504 |
ctgcagtaattaagaacaaagaaaacatagtgtaagcatatttgcatgaattgtacacaataaaacttgaaaaataaaattaagatgaatactcctaaga |
21116405 |
T |
|
| Q |
324 |
ccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtctctgattttccttggactcgtt |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
21116404 |
ccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacgcgcgttgtcactgattttccttggactcgtt |
21116305 |
T |
|
| Q |
424 |
ggttttctgcatgtcaata |
442 |
Q |
| |
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||||||||||||||||||| |
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| T |
21116304 |
ggttttctgcatgtcaata |
21116286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 127 - 438
Target Start/End: Original strand, 12928950 - 12929266
Alignment:
| Q |
127 |
gctatatacatggtatcgacattttgtgtgattcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccagacttacagaatctg |
226 |
Q |
| |
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||||||||||||||| | | ||||| |||||||||||||| ||||||||||| ||| ||||||||||||| ||||| |||| ||||||||||| ||| |
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| T |
12928950 |
gctatatacatggtaacaatattttacgtgattcataccttgtctaatgatgttacagaaaccttgaatttgtcatgtgaatttggacttacagaacctg |
12929049 |
T |
|
| Q |
227 |
cagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaat----tgtacacaataaaacttgaaaaataaaattaagatgaatactcctaag |
322 |
Q |
| |
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||||||||||| |||||||||||| || |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12929050 |
cagtaattaagaacaaagaaaacatagtttaaggatatttgcatgaatattgtgtacacaataaaacttcaaaaataaaattaagatgaatactcctaag |
12929149 |
T |
|
| Q |
323 |
accatgtg-tttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtctctgattttccttggactcg |
421 |
Q |
| |
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||||| || |||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
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| T |
12929150 |
accatatgttttttgggcagctgtttgaaattccttctccgaaattgcccacatattccatatcttctactggcattgtcattgattttccttggactcg |
12929249 |
T |
|
| Q |
422 |
ttggttttctgcatgtc |
438 |
Q |
| |
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||||||||||| ||||| |
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| T |
12929250 |
ttggttttctgtatgtc |
12929266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 24 - 434
Target Start/End: Complemental strand, 12912061 - 12911651
Alignment:
| Q |
24 |
ctgaatctccactaaatatattatgcctcttcaacag---acttggcagtacaaccagctgcatatacaagaacaaactnnnnnnnttcacatgcacgca |
120 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||| |||||| |||||||||| ||||||||| | ||||||| | | |||| ||| || |
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| T |
12912061 |
ctgaatttccactaaatataccatgcttcttcaacagctcacttggtagtacaaccaactgcatatatatgaacaaa-ttaaattttatacattcacaca |
12911963 |
T |
|
| Q |
121 |
caaagcgctatatacatggtatcgacattttgtgtgattcataccttatctaatgatgtcacaaaaaccttgaatttctcatgcgaatccagacttacag |
220 |
Q |
| |
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|| | ||||||||||||||| | |||||| || ||||||||||| ||| ||||||| | |||||||||||| ||||||| ||| ||||||||||| |
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| T |
12911962 |
cata--gctatatacatggtaacagcattttacgtaattcataccttgtctgatgatgttataaaaaccttgaacatctcatgtaaattcagacttacag |
12911865 |
T |
|
| Q |
221 |
aatctgcagtaattaagtacaaagaaaacagcgtgtaagcatatttgcatgaattgtacacaataaaacttgaaaaataaaattaagatgaatactccta |
320 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||| | ||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||| |
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| T |
12911864 |
aatctgcagtaattaacaacaaagaaaacatagtttaaggagatttgcatgaattgtacacaaaaaaacacgaaagcaaaaattaagatgaataccccta |
12911765 |
T |
|
| Q |
321 |
agaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtctctgattttccttggactc |
420 |
Q |
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| ||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| ||| | ||||||||||||||| ||||||||| |
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| T |
12911764 |
aaaccatatgtttttgtgcagctctttgaaattccatctccaaaattgcccgcatattccatatcttttactggtgttgtctctgatttttcttggactc |
12911665 |
T |
|
| Q |
421 |
gttggttttctgca |
434 |
Q |
| |
|
||||||||||||| |
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| T |
12911664 |
cttggttttctgca |
12911651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 12902242 - 12902392
Alignment:
| Q |
261 |
atatttgcatgaattgtacacaataaaa-cttgaaaaataaaattaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttct |
359 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| |||||| || |||| |
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| T |
12902242 |
atattttcatgaattgtacacgataaaagcttgaaaaataaaattaagatgaatactcttgagatcatgtgtttttaggcagctgtttgaaatttgttct |
12902341 |
T |
|
| Q |
360 |
ccaaaattgccca----catattccatatcttctacccgcgttgtctctga |
406 |
Q |
| |
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||||||||||| ||||||||||||||||| | || |||||||||| |
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| T |
12902342 |
aaaaaattgcccacatgcatattccatatcttcttcgggcattgtctctga |
12902392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 438
Target Start/End: Complemental strand, 12928313 - 12928178
Alignment:
| Q |
303 |
ttaagatgaatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtct |
402 |
Q |
| |
|
||||||| ||||||| ||||||| ||| | |||| ||||||| || | ||||||||||||||| | | ||||||||| |||||||||| |||||||| |
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|
| T |
12928313 |
ttaagatcaatactcttaagaccttgtttgtttgggcagctcctttatattccttctccaaaatcgtctgcatattccacatcttctaccgccgttgtct |
12928214 |
T |
|
| Q |
403 |
ctgattttccttggactcgttggttttctgcatgtc |
438 |
Q |
| |
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| |||||| || |||||||| |||||||||||||| |
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| T |
12928213 |
cagatttttctcggactcgtgtgttttctgcatgtc |
12928178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 12918043 - 12918170
Alignment:
| Q |
311 |
aatactcctaagaccatgtgtttttgtgcagctctttgaacttccttctccaaaattgcccacatattccatatcttctacccgcgttgtctctgatttt |
410 |
Q |
| |
|
||||||| ||||||| ||| | |||| || ||| ||||| ||||||||||||||| || ||||||||| ||||||||| || ||||||| ||||| |
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|
| T |
12918043 |
aatactcttaagaccttgtttatttggacaactccttgaaattccttctccaaaatcgcatgcatattccaaatcttctactggcattgtctcaaatttt |
12918142 |
T |
|
| Q |
411 |
ccttggactcgttggttttctgcatgtc |
438 |
Q |
| |
|
|||| |||||||| ||||||||||||| |
|
|
| T |
12918143 |
tcttgcactcgttgtttttctgcatgtc |
12918170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 12902069 - 12902143
Alignment:
| Q |
26 |
gaatctccactaaatatattatgcctcttcaacag---acttggcagtacaaccagctgcatatacaagaacaaa |
97 |
Q |
| |
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|||| |||||||||||||||||| || || ||||| |||||| |||||||||| ||||||||| ||||||||| |
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|
| T |
12902069 |
gaatttccactaaatatattatgtctttttaacagctcacttggtagtacaaccaactgcatatataagaacaaa |
12902143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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