View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16557_low_12 (Length: 429)

Name: NF16557_low_12
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16557_low_12
NF16557_low_12
[»] chr6 (9 HSPs)
chr6 (26-419)||(30954041-30954433)
chr6 (191-294)||(30943762-30943864)
chr6 (181-279)||(30959854-30959952)
chr6 (185-255)||(31222966-31223036)
chr6 (176-244)||(31229022-31229090)
chr6 (355-409)||(30943943-30943997)
chr6 (19-69)||(30985618-30985670)
chr6 (19-69)||(30991782-30991834)
chr6 (183-234)||(31213416-31213467)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 26 - 419
Target Start/End: Original strand, 30954041 - 30954433
Alignment:
Q  26 ggtacctatatcctttagccaaagttctttttgtgttctgtaaaataacttatttatatatctcggtgtgaaagcggtcgtctctagccacgatgaaatc 125  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954041 ggtacctatatcctttagccaaatttctttttgtgttctgtaaaataacttatttatatatctcggtgtgaaagcggtcgtctctagccacgatgaaatc 30954140  T
Q  126 attagccagctttgatttttctttagtaaccaatgttctaacaattcctgtatgatctttctactactatcgcagataagcatttgagttggcaagggaa 225  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954141 attagccagctttgatttttcttt-gtaaccaatgttctaacaattcctgtatgatctttctactactatcgcagataagcatttgagttggcaagggaa 30954239  T
Q  226 aatgaaaatcattctaggtgatacatctataatctaatttttctactgtatttctcccttaaactatttatttggaatatttagtaatgatcgttaatct 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954240 aatgaaaatcattctaggtgatacatctataatctaatttttctactgtatttctcccttaaactatttatttggaatatttagtaatgatcgttaatct 30954339  T
Q  326 gtatgcagaagaagaacttttttccttccagaccaaaactatactatccttgtcataataaattaatgaaaacctcaacttttgaccacctatg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30954340 gtatgcagaagaagaacttttttccttccagaccaaaactatactatccttgtcataataaattaatgaaaacctcaacttttgaccatctatg 30954433  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 30943762 - 30943864
Alignment:
Q  191 actatcgcagataagcatttgagttggcaagggaaaatgaaaatcattctaggtgatacatctataatctaatttttctactgtatttctcccttaaact 290  Q
    |||||||||| ||||||  |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  |||    
T  30943762 actatcgcaggtaagcagctgagctggaaagggaaaatgaaaatcattctaggtgatacatctataatctaa-ttttctattgtatttctcccttttact 30943860  T
Q  291 attt 294  Q
    ||||    
T  30943861 attt 30943864  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 30959854 - 30959952
Alignment:
Q  181 tctttctactactatcgcagataagcatttgagttggcaagggaaaatgaaaatcattctaggtgatacatctataatctaatttttctactgtatttc 279  Q
    ||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| | ||||||||    
T  30959854 tctttctacaactatcgcaggtaagcaaatgagttggcaagggaaaatgaaaatcattctaggtaatacaactacagtctaatttttcgattgtatttc 30959952  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 31222966 - 31223036
Alignment:
Q  185 tctactactatcgcagataagcatttgagttggcaagggaaaatgaaaatcattctaggtgatacatctat 255  Q
    |||||||| ||| ||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  31222966 tctactaccatcacaggtaagcagttgagcaggcaagggaaaatgaaaatcattctaggtgatacatctat 31223036  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 31229022 - 31229090
Alignment:
Q  176 tatgatctttctactactatcgcagataagcatttgagttggcaagggaaaatgaaaatcattctaggt 244  Q
    ||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| ||||||||||| ||||    
T  31229022 tatgatctttctactactatcacaggtaagcatttgagctggcaagagaaaaggaaaatcattcaaggt 31229090  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 30943943 - 30943997
Alignment:
Q  355 agaccaaaactatactatccttgtcataataaattaatgaaaacctcaacttttg 409  Q
    |||| |||||||||||||| || |||||||| |||||||| ||||||||||||||    
T  30943943 agactaaaactatactatcattatcataatacattaatgacaacctcaacttttg 30943997  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30985618 - 30985670
Alignment:
Q  19 gtgacttggtacctatatcctttagccaaagttc--tttttgtgttctgtaaa 69  Q
    ||||||||||||| ||||||||| ||||||||||  |||||||||||||||||    
T  30985618 gtgacttggtacccatatccttttgccaaagttcattttttgtgttctgtaaa 30985670  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30991782 - 30991834
Alignment:
Q  19 gtgacttggtacctatatcctttagccaaagttc--tttttgtgttctgtaaa 69  Q
    ||||||||||||| ||||||||| ||||||||||  |||||||||||||||||    
T  30991782 gtgacttggtacccatatccttttgccaaagttcattttttgtgttctgtaaa 30991834  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 31213416 - 31213467
Alignment:
Q  183 tttctactactatcgcagataagcatttgagttggcaagggaaaatgaaaat 234  Q
    ||||| |||||||||||| |||| | ||||| ||||||||||||||||||||    
T  31213416 tttctcctactatcgcaggtaaggagttgagctggcaagggaaaatgaaaat 31213467  T

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