View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_14 (Length: 414)
Name: NF16557_low_14
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 8262668 - 8262270
Alignment:
| Q |
1 |
cactcatttctgttgaagcccgcaggagcaccatacacatgcagtggttgtggagaattagggtttggatcaagttaccattgtgaaaatatcaattgca |
100 |
Q |
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| T |
8262668 |
cactcatttctgttgaagcccgcaggagcaccatacacatgcagtggttgtggagaattagggtttggatcaagttaccattgtgaaaatatcaattgca |
8262569 |
T |
|
| Q |
101 |
gctatgtcttgcatggagaatgtgcaaatcctgattcttacgcctttcatccatttttcgagaaaagctatttcgagttccatcgaaaaccacctggata |
200 |
Q |
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| T |
8262568 |
gttatgtcctgcatggagaatgtgcatatcctgatcctcatgcccgtcatccatttttcaaagaaagctatttcgaattccataagaaaccaactggaaa |
8262469 |
T |
|
| Q |
201 |
taaaacaagatactgcgatgcttgtggnnnnnnngtgttaggttttgtttatcattgctctagcacagacaacgatctccatccatgttgtttgaagctg |
300 |
Q |
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| T |
8262468 |
taaaacaagatactgtaatgcttgtggaaaagatgtgttagggtttgtttatcattgctctagcacagactatgatcttcatccatgttgtttgaagctg |
8262369 |
T |
|
| Q |
301 |
aaacatagtatttcagatgaaagtggaaacgtgacactctatcataaagctcgttcaaagtgtgtgaaatgtaagcataagcatgttgtgggaaatttt |
399 |
Q |
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| T |
8262368 |
aaacatagtatttcagatgaaagtggaaacgtgacactctatcataaagctcgttcaaagtgtgtgaaatgtaagcataagcatgttgtgggaaatttt |
8262270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 335
Target Start/End: Original strand, 8279737 - 8280049
Alignment:
| Q |
23 |
caggagcaccatacacatgcagtggttgtggagaattagggtttggatcaagttaccattgtgaaaatatcaattgcagctatgtcttgcatggagaatg |
122 |
Q |
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| T |
8279737 |
caggagccccatacacatgcactggttgtggagaactagggttcggatcaagctaccattgcgaaaatatcaattgcagttatgtccttcatgaagtatg |
8279836 |
T |
|
| Q |
123 |
tgcaaatcctgattcttacgcctttcatccatttttcgagaaaagctatttcgagttccatcgaaaaccacctggatataaaacaagatactgcgatgct |
222 |
Q |
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| T |
8279837 |
tgcaaatcccgatccttacgcctttcatccatttttcgagaaaagctatttcgagttccatcgaaaaccacctggatataaaacaagatactgtaatgct |
8279936 |
T |
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| Q |
223 |
tgtggnnnnnnngtgttaggttttgtttatcattgctctagcacagacaacgatctccatccatgttgtttgaagctgaaacatagtatttcagatgaaa |
322 |
Q |
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| T |
8279937 |
tgtggaaaagatgtgttagggtttgtttatcattgctctagcacagactatgatcttcatccatgttgtttgaagttgcaacatagtatatctgatgata |
8280036 |
T |
|
| Q |
323 |
gtggaaacgtgac |
335 |
Q |
| |
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||||||||||| |
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| T |
8280037 |
acggaaacgtgac |
8280049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 396
Target Start/End: Original strand, 8322323 - 8322694
Alignment:
| Q |
25 |
ggagcaccatacacatgcagtggttgtggagaattagggtttggatcaagttaccattgtgaaaatatcaattgcagctatgtcttgcatggagaatgtg |
124 |
Q |
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|||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
8322323 |
ggagaaccatacacatgcagcggttgtaaagaattaggttttggatcaagttaccattgtgaaaataagaattgcagttatgtcctgcatggagaatgtg |
8322422 |
T |
|
| Q |
125 |
caaatcctgattcttacgcctttcatccatttttcgagaaaagctatttcgagttccatcgaaaaccacctggatataaaacaagatactgcgatgcttg |
224 |
Q |
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| T |
8322423 |
catatcctgatcctcatgcccgtcatccatttttcaggaaaagctgttttgatttccttagaaaaccacctggatataaaagaagatactgtaatgcttg |
8322522 |
T |
|
| Q |
225 |
tggnnnnnnngtgttaggttttgtttatcattgctctagcacagacaacgatctccatccatgttgtttgaagctgaaacatagtatttcagat-gaaag |
323 |
Q |
| |
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||| |||||||| ||||||||||||||||||| |||| | ||||| ||||| ||||||||||||||| || |||||||||| ||| || | |
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| T |
8322523 |
tggaggagatgtgttagggtttgtttatcattgctctaaaacaggatatgatcttcatccttgttgtttgaagctgcaagatagtatttctgatggagac |
8322622 |
T |
|
| Q |
324 |
tggaaacgtgacactctatcataaagctcgttcaaagtgtgtgaaatgtaagcataagcatgttgtgggaaat |
396 |
Q |
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||||| || |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8322623 |
gtgaaac-tgcaactctatcgtaaatctcgttcaaagtgtgtaaaatgtaagcataagcatgttgtgggaaat |
8322694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 8280074 - 8280115
Alignment:
| Q |
354 |
ttcaaagtgtgtgaaatgtaagcataagcatgttgtgggaaa |
395 |
Q |
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| T |
8280074 |
ttcaaagtgtggtaaatgtaagcataagcatgttatgggaaa |
8280115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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