View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_17 (Length: 370)
Name: NF16557_low_17
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 25 - 359
Target Start/End: Original strand, 37494054 - 37494381
Alignment:
| Q |
25 |
ctcttaacatgtttcacctaaaaacaaaatttgattgaacttcaggatttgtttaacacacgagaaacaatgtgccactagcacacttgagttaacccat |
124 |
Q |
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| T |
37494054 |
ctcttaacatgtttcacctaaaaacaaaatttgattgaacttcagaatttgtttaacacacgagaaacgatgtgccattagcacacttgagttaacccat |
37494153 |
T |
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| Q |
125 |
caacacttgaccaccagatgatgaagatcatttaacgatccgtcgatcacaacatgaatctgttaccctttaaatgtcaacaaattattttctttcttac |
224 |
Q |
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| T |
37494154 |
caacacttaaccatcagatgatgaagatcatttaacgatccgtcgatcacaacatgaatatgttaccctttaaatgtcaacaaattattttctttcttac |
37494253 |
T |
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| Q |
225 |
aacaatccttgaaaggtagtactatatatgtgatgtttctccgatcaactggaaatccattttctctactcaaatgaagaaatcctccatacaaatgatt |
324 |
Q |
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| T |
37494254 |
aacaatccttgaacg---gtactatatatgtgatgtttctccgatcaactggaa----attttttctactcaaatgaagaaaaccttcatacaaataatt |
37494346 |
T |
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| Q |
325 |
ttttagtaaaagatatgcagtccttttttattcat |
359 |
Q |
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| T |
37494347 |
ttttagtaaaagatatgtagtccttttttattcat |
37494381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 31742333 - 31742384
Alignment:
| Q |
193 |
tttaaatgtcaacaaattatt--ttctttcttacaacaatccttgaaaggta |
242 |
Q |
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| T |
31742333 |
tttaaatgtcaacaaattattctttctttctcacaagaatccttgaaaggta |
31742384 |
T |
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