View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_18 (Length: 370)
Name: NF16557_low_18
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 24390695 - 24391042
Alignment:
| Q |
9 |
cacagacaattcttctgataatgattcaataaacgcgttgtttgcttcgtgttcttatggattatctacttacgatatcaaactcaaagtggcgtttgtt |
108 |
Q |
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| T |
24390695 |
cacagccaactcttctgataatgattcaattaacgcgtggtttgcctcgtgttcttatggattatctacttatgatatcaaactcaaagtggcgtttgtt |
24390794 |
T |
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| Q |
109 |
ggttcgtttcttctatgtgacgctgtttctcgcggtgatttggaatgtgttaggagtttgattaaacggcaacgttctgtggttttggatttgtctttga |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24390795 |
ggttcgtttcttctatgtgatgctgtttctcgcggtgatttggaatgtgttaggagtttgatcaaacggcaacgttctgtggttttggatttgtctttga |
24390894 |
T |
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| Q |
209 |
aggagtctgaatcgcttctacgagttgctacggagttggttcacccagatgatatggttcatcttctccttgaagctggattgagagttcatgaagccgt |
308 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24390895 |
aggagtctgagtcgcttctacgagttgctacggagttggctcacccagatgatatggttcatcttctccttgaagctgggttgagagttcatgaagccgt |
24390994 |
T |
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| Q |
309 |
tggattcgataaattcaagggttctgatgatatacttgtggttggtgg |
356 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
24390995 |
tggattcgataaattcaagggttctgatgatgtacctgtggtgggtgg |
24391042 |
T |
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