View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_2 (Length: 593)
Name: NF16557_low_2
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 103 - 580
Target Start/End: Original strand, 4223192 - 4223675
Alignment:
| Q |
103 |
tattcaacatttaatcttcttttttcttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaatt |
202 |
Q |
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|||| ||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
4223192 |
tatttaacatttaatctt--ttttcctaatatatttgtttcttc-ctcaaaacttttgcggttaaaatagcaaagctaaggcctcagataaacctcaatt |
4223288 |
T |
|
| Q |
203 |
atgttataa-----ctaccaaatataatctaaaaggctcatcaaattttttatgtcaatttcattacaattggttattccactcaaaattttagctgcac |
297 |
Q |
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| T |
4223289 |
atgttataaattaactaccaaatacaaactaaaaggctcatgaaattttttatgtaaatttcattacaattggttattccactcaaaattttagctgcac |
4223388 |
T |
|
| Q |
298 |
tttttatgtgctagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaa-cacaatcaattaccactaagcttttttagcttc |
396 |
Q |
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| T |
4223389 |
tttttatgtactagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaattacaatcaattaccactaagcttttttagcttc |
4223488 |
T |
|
| Q |
397 |
atatatgtccacca--aaccgcaaaccctatcccatttctattatcatactatttattccttctttttaattaatataagaataatctagtcaatatcac |
494 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4223489 |
atatatgtccaccatcaaccgaaaaccctatcccatttctattataatactatttattccttctttttaattaatataagaaaaatctagtcaatatcac |
4223588 |
T |
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| Q |
495 |
cttaaaccacaacaaaaaaggaaaatcaaaagtgatgttaatt-aacaatatgattcacacacaatcttcaaatttgtgagaataat |
580 |
Q |
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| T |
4223589 |
cttaaaccacaacataaaaggaaaatcaaaagtgatattaattaaacactatgattcacacacaatcttcaaatttgtgagaataat |
4223675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 4223074 - 4223146
Alignment:
| Q |
16 |
aagaactaaaaatgaccgaaattattttgtaatttctaactatctttgtgctttaacatattcaacatttctt |
88 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | | | ||||||||||||||||||||||||| |
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| T |
4223074 |
aagaactaaaaatgacctaaattattttgtaatttctaaccaccgtcatgctttaacatattcaacatttctt |
4223146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 43002905 - 43002701
Alignment:
| Q |
16 |
aagaactaaaaatgaccgaaattattttgtaatttctaactatctttgtgctttaacatattcaacatttcttgtaagnnnnnnnnntattcaacattta |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| || | |
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| T |
43002905 |
aagaactaaaaatgactgaaattattttgtaatttctaactaccttcgtgctttaacatattcaacatttcttgtaagaaaaaaaa--attcaaccttca |
43002808 |
T |
|
| Q |
116 |
atcttctttttt--cttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaattatgttataact |
213 |
Q |
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| T |
43002807 |
atcttctttttttccttatatatttgtttcttc-ctcaatacttttgcggttacaactgcaaagctaaaggctcagataagcctcaattatgttataact |
43002709 |
T |
|
| Q |
214 |
accaaata |
221 |
Q |
| |
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| |||||| |
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| T |
43002708 |
agcaaata |
43002701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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