View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_21 (Length: 350)
Name: NF16557_low_21
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 32145269 - 32144921
Alignment:
| Q |
1 |
attattccattttctcaaattattactggtgttaaagtgtcaat--acatgtctatgtttcataactaacatgcctaattgacttaaaatgcaagcaagc |
98 |
Q |
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| T |
32145269 |
attattccattttctcaaattattactggtgttaaagtgtcaatgtacatgtctatgtttcataactaacatgcctaattgacttaaaatgcaagcaagc |
32145170 |
T |
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| Q |
99 |
ttttttcctgaattaacaaacagaagtgaatgcacatggactatggaaatgctacagggaagaaatgaatcctacttttggttctgttggttgtggctgt |
198 |
Q |
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| T |
32145169 |
ttttttcctgaattaacaaacagaagtgaatgcacatggactatggaaatgctacagggaagaaatgaatcctacttttggttctgttggttgtggctgt |
32145070 |
T |
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| Q |
199 |
tggtgaatctggtagaagattgcacatgagcatttcagaagtttctctgtacttttgaaggtcaaggttctctgcatctgggataatatctctagcacca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32145069 |
tggtgaatctggtagaagattgcacatgagcatttcagaagtttctctgtacttttgaaggtcaaggttctctgcatctggg---atatctctagcacca |
32144973 |
T |
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| Q |
299 |
aagaagtttactctggacaaaagaacctaattcaatgtcacacaaaatgcat |
350 |
Q |
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| T |
32144972 |
aagaagtttactctggacaaaagaacctaattcaatgtcacacaaaatgcat |
32144921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 2796571 - 2796535
Alignment:
| Q |
8 |
cattttctcaaattattactggtgttaaagtgtcaat |
44 |
Q |
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| T |
2796571 |
cattttctcaaattattaatggtgttgaagtgtcaat |
2796535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 9791380 - 9791348
Alignment:
| Q |
8 |
cattttctcaaattattactggtgttaaagtgt |
40 |
Q |
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| T |
9791380 |
cattttctcaaattattaatggtgttaaagtgt |
9791348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 17195373 - 17195413
Alignment:
| Q |
4 |
attccattttctcaaattattactggtgttaaagtgtcaat |
44 |
Q |
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|||||||||| ||||||||||||||||||| | |||||||| |
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| T |
17195373 |
attccattttatcaaattattactggtgtttatgtgtcaat |
17195413 |
T |
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