View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16557_low_22 (Length: 322)

Name: NF16557_low_22
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16557_low_22
NF16557_low_22
[»] chr8 (1 HSPs)
chr8 (13-288)||(17091066-17091343)
[»] chr2 (3 HSPs)
chr2 (13-287)||(35956801-35957077)
chr2 (18-287)||(26886635-26886906)
chr2 (192-287)||(12434433-12434528)
[»] chr5 (2 HSPs)
chr5 (14-285)||(32158969-32159242)
chr5 (286-322)||(36026238-36026274)
[»] chr4 (3 HSPs)
chr4 (13-287)||(44077271-44077547)
chr4 (13-287)||(9753376-9753649)
chr4 (169-287)||(27586894-27587014)
[»] chr3 (3 HSPs)
chr3 (75-284)||(54865121-54865331)
chr3 (13-287)||(52326492-52326748)
chr3 (187-287)||(38566702-38566802)
[»] chr6 (1 HSPs)
chr6 (185-287)||(31001046-31001148)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 17091343 - 17091066
Alignment:
Q  13 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17091343 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaacgtgattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgctcaa 17091244  T
Q  113 tcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaa--tgtgcatattaggcgtgaagctaatc 210  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17091243 tcacctctttcatacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaatttgtgcatattaggcgtgaagctaatc 17091144  T
Q  211 aagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtattc 288  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  17091143 aagctgcgcattatttagcaaaatatgcatcatctcatcatgagaatgtatggattaaagatgctcccaattgtattc 17091066  T

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Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 35956801 - 35957077
Alignment:
Q  13 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaa 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||| ||    
T  35956801 gatgaaaaaaggtgtggaattcgcaaagtatatgttatttttgaacgtgattgttgaatctgattcacaaaatgtgatatctgttgtcacagatgctcaa 35956900  T
Q  113 tcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaa--tgtgcatattaggcgtgaagctaatc 210  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  35956901 tcgcctctttcatacatggctaccattgttgatgattgtagacttttagcttgtcattttcaaattttacaatttgtgcatattaggcgtgaagctaatc 35957000  T
Q  211 aagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtatt 287  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  35957001 aagctgcgcattatttagcaaaatacgcattatctcatcatgaggatgtatggattgaagatgcttccaattgtatt 35957077  T

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Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 26886906 - 26886635
Alignment:
Q  18 aaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaatcgcc 117  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| | | |  |||| ||    
T  26886906 aaaaaggtgtggaattcgcaaaggatatgttatttttgaacgtgattgttgaatctgattcgcaaaatgtgatatctgctgtcacagttacccaatcacc 26886807  T
Q  118 tctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaat--gtgcatattaggcgtgaagctaatcaagct 215  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||  ||||| |||||| ||||||| ||||| |||    
T  26886806 tctttcatacatgggtaccattgttgatgattgtaaactcttagcatgtcattttcaaaatttacaatttgtgcacattaggtgtgaagccaatcaggct 26886707  T
Q  216 acgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtatt 287  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26886706 gcgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcctaattgtatt 26886635  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 12434433 - 12434528
Alignment:
Q  192 attaggcgtgaagctaatcaagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtatt 287  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||    
T  12434433 attaggcgtgaaaccaatcaggctgcgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagattttcctaattgtatt 12434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 32159242 - 32158969
Alignment:
Q  14 atgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaat 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| | ||||||||||  |||    
T  32159242 atgaaaaaaggtatggaattcgcaaaggatatgttatttttgaaagtgattattgaatctgattcgcaaaatgtgatatctgctttcacggatgcccaat 32159143  T
Q  114 cgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaa--tgtgcatattaggcgtgaagctaatca 211  Q
    ||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| || |||||||||||||| |||||    
T  32159142 cgcttctttcatacatgtgtaccattgtcgatgattgtagacttttagcttgtcattttcaaaatttacaatttgtacacattaggcgtgaagccaatca 32159043  T
Q  212 agctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgta 285  Q
     | | |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32159042 ggttgcgcattatttagcaaaatacacatcatctcatcatgaggatgtacggattgaagatgctcccaattgta 32158969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 36026238 - 36026274
Alignment:
Q  286 ttcttctttctagcagaagtgtccatgaagacactgt 322  Q
    ||||||||||||| |||||||||||||||||||||||    
T  36026238 ttcttctttctagtagaagtgtccatgaagacactgt 36026274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 44077547 - 44077271
Alignment:
Q  13 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaa 112  Q
    |||||||||| || ||||||||||||||||||||| |||||||||  | |||||||||||| ||||||||||||||||||||| |||||| |||||  ||    
T  44077547 gatgaaaaaatgtatggaattcgcaaaggatatgtaatttttgaaattgattgttgaatcttattcgcaaaatgtgatatctgctgtcacagatgcccaa 44077448  T
Q  113 tcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaa--tgtgcatattaggcgtgaagctaatc 210  Q
    ||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||| ||||    
T  44077447 tcgtctctttcctacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaatctgtgcacattaggcatgaagccaatc 44077348  T
Q  211 aagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtatt 287  Q
    | |||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  44077347 aggctgtacattatttagcaaaatacgcatcatctcatcatgaggatgtatgaattgaagatattcccaattgtatt 44077271  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 9753376 - 9753649
Alignment:
Q  13 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||| | |||||||||| |  ||    
T  9753376 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaacgtgcttgttgaatccgattcgcaaaatgtgatatcgggtgtcacggattcccaa 9753475  T
Q  113 tcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttaca--atgtgcatattaggcgtgaagctaatc 210  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||   |||||| ||||||||||| || |       
T  9753476 tcgcctctttcatacatgggtaacattgttgatgattgtagacttttagtttgtcattttcaaaatttacattttgtgcacattaggcgtgaggcca--- 9753572  T
Q  211 aagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtatt 287  Q
    | | | ||||||||||| ||||||| | |||||||||||||||| ||||||||||| || |||||||||||| ||||    
T  9753573 aggttgcgcattatttaacaaaatatgtatcatctcatcatgagaatgtatggattaaaaatgctcccaattatatt 9753649  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 27586894 - 27587014
Alignment:
Q  169 ttttcaaaatttacaatgtgc--atattaggcgtgaagctaatcaagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggatt 266  Q
    |||||| |||||||||| |||  | |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27586894 ttttcagaatttacaatttgcgcacattaggcgtgaagccaatcaggctgcgcattatttagcaaaatacgcatcatctcaccatgaggatgtatggatt 27586993  T
Q  267 gaagatgctcccaattgtatt 287  Q
    |||||| || |||||||||||    
T  27586994 gaagatacttccaattgtatt 27587014  T

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Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 75 - 284
Target Start/End: Original strand, 54865121 - 54865331
Alignment:
Q  75 attcgcaaaatgtgatatctgttgtcacggatgcttaatcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttca 174  Q
    |||| |||||||||||||||   |||  ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  54865121 attcacaaaatgtgatatctccagtcctggatgctcaatcgcctctttcatacatgg-taccattgttgatgattgtagacttttaacttgtcattttca 54865219  T
Q  175 aaatttacaat--gtgcatattaggcgtgaagctaatcaagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagat 272  Q
    |||||||||||  ||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54865220 aaatttacaatttgtgcatattaggcgtgaagctaaacaagctgcacattatttagcaaaatacacatcatctcatcatgaggatgtatggattgaagat 54865319  T
Q  273 gctcccaattgt 284  Q
    | ||||||||||    
T  54865320 gatcccaattgt 54865331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 52326748 - 52326492
Alignment:
Q  13 gatgaaaaaaggtgtggaattcgcaaaggatatgttatttttgaatgtaattgttgaatctgattcgcaaaatgtgatatctgttgtcacggatgcttaa 112  Q
    ||||||||||| |||||||||||||||||||| |||||| |||||  | |||||||||||||||||||||||| |||||| || |             ||    
T  52326748 gatgaaaaaag-tgtggaattcgcaaaggatacgttattcttgaacatgattgttgaatctgattcgcaaaatatgatatttgct-------------aa 52326663  T
Q  113 tcgcctctttcacacatgggtaccattgttgatgattgtagacttttagcttgtcattttcaaaatttacaatgtgcatattaggcgtgaagctaatcaa 212  Q
    || ||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    | |||||||||||||| ||||||    
T  52326662 tcacctatttcatacatgggtaccattgttgatgattttagacttttaacttgtcatttttaaaatttacaat----acattaggcgtgaagccaatcaa 52326567  T
Q  213 gctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtatt 287  Q
     || | ||||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||| |||| ||||    
T  52326566 actgcacattatttagcaaaatacgcatcatttcatcatgagaatgtgtggattgaagatactcctaattatatt 52326492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 38566802 - 38566702
Alignment:
Q  187 tgcatattaggcgtgaagctaatcaagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgtat 286  Q
    |||| |||||||||||||| ||||| | | |||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  38566802 tgcacattaggcgtgaagccaatcaggttgcgcattatttagcataatacgcatcattacatcatgaggatgtatgaattgaagatgctcccaattgtat 38566703  T
Q  287 t 287  Q
    |    
T  38566702 t 38566702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 31001046 - 31001148
Alignment:
Q  185 tgtgcatattaggcgtgaagctaatcaagctacgcattatttagcaaaatacgcatcatctcatcatgaggatgtatggattgaagatgctcccaattgt 284  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31001046 tgtgcatgttaggcgtgaagctaatcaagctgcgcattatttagcaaaatacgcatcatctcatcatgaagatgtatggattgaagatgctcccaattgt 31001145  T
Q  285 att 287  Q
    |||    
T  31001146 att 31001148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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