View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_3 (Length: 577)
Name: NF16557_low_3
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 577
Target Start/End: Complemental strand, 2794787 - 2794225
Alignment:
| Q |
15 |
aaaagcaaggttatccaaatcaagtatccggcattgacccccattttccccaactccatcaccagttcccctatcaatgtccatgtccccgtctttcaac |
114 |
Q |
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| T |
2794787 |
aaaagcaaggttatccaaatcaagcatccggcgttgacccccattttccccaactccatcaccagttcccctatcaatgtccatgtccccgtctttcaac |
2794688 |
T |
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| Q |
115 |
cttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacaacatataactcctccaaaattgactccaaattcg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2794687 |
cttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacagcatataactcctccaaaattgactccaaattcg |
2794588 |
T |
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| Q |
215 |
accccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaa |
314 |
Q |
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| T |
2794587 |
accccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcattagaaa |
2794488 |
T |
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| Q |
315 |
cttaacaagactaaacttattcaaatcaaaataccccagcaacctcttctccacttctcggtcatcagcctcacccaaaaccttcaacacctcttcagca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2794487 |
cttaacaagactaaacttattcaaatcaaaataccccaacaacctcttctccacttctctgtcatcagcctcacccaaaaccttcaacacctcttcagca |
2794388 |
T |
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| Q |
415 |
agccttcgacaattttctggatcaatctctggtccaaaagccggcgagattttcctctgaagccaatacgcatcaatatcatgcacattcaattcttcat |
514 |
Q |
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| T |
2794387 |
agccttcgacaattttccggatcaatctctggtccaaaagccggcgagattttcctctgaagccaatacgcatcaatatcatgcacattcaattcttcat |
2794288 |
T |
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| Q |
515 |
catctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcaccta |
577 |
Q |
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| T |
2794287 |
catctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcaccta |
2794225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 334
Target Start/End: Complemental strand, 29262049 - 29261933
Alignment:
| Q |
218 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
317 |
Q |
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||||||||||||||||||| | || |||||||| ||||| ||||| ||||| | ||||||||||| ||| |||| | |||| ||| || |||||| |
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| T |
29262049 |
ccttcatctcttcctcaatcgtctctctctcttcctgatcttgtgccctcgccaaacgagtacaccacaaaattttcagcctatttcgcaacaaaaactt |
29261950 |
T |
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| Q |
318 |
aacaagactaaacttat |
334 |
Q |
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| T |
29261949 |
aataagactaaacttat |
29261933 |
T |
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