View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_31 (Length: 239)
Name: NF16557_low_31
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 26023422 - 26023205
Alignment:
| Q |
19 |
attcctactttgattacaggtcgtcaagtcaatcacaattattaacgatcaaaggaagaatgatcaattcatattttaacctcaaacaatgaataaggaa |
118 |
Q |
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| T |
26023422 |
attcctactttgattacaggtcgtcaagtcaatcacaattattaatgatcaaaggaagagtgatcaattcatattttaacctcaaacaatgaataaggaa |
26023323 |
T |
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| Q |
119 |
taataacaatggttagagtaaggtttataagaaagagttagaaatagaggag-aatcacgttttcatatcttaccaactaaattctaaacaacgaaaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26023322 |
taataacaatggttagagtaaggtttataagaaagagttagaaaaagaggagaaatcacgttttcatatcttaccaactaaaatctaaacaacgaaaagg |
26023223 |
T |
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| Q |
218 |
aagcaaaattatagttct |
235 |
Q |
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| T |
26023222 |
atgcaaaattatagttct |
26023205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 33330135 - 33330103
Alignment:
| Q |
86 |
ttcatattttaacctcaaacaatgaataaggaa |
118 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
33330135 |
ttcatatttgaacctcaaacaatgaataaggaa |
33330103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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