View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_32 (Length: 237)
Name: NF16557_low_32
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4411265 - 4411037
Alignment:
| Q |
1 |
aaatatttgtattgtgaataatactttaaaatttcaaggtaaaagaaaactactaccagcatatatggctaatcatgtnnnnnnnnnnnn-tgataaatg |
99 |
Q |
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| T |
4411265 |
aaatatttgtattgtgaataatactttaaaatttcaaggtaaaagaaaactactaccagcatatatggctaatcatgtaaaaaaaaaaaaatgataaatg |
4411166 |
T |
|
| Q |
100 |
gaggatctctaaaaacaaaccgaagaagtaaatccacttagatagttcaatgtaattgattgagtttattctttgtaagaaaaatataatgtttttatag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4411165 |
gaggatctctaaaaacaaaccgaagaagtaaatccacttagatagttcaatgtaattgattgagtttattctttgtaagaaaattataatgtttttatag |
4411066 |
T |
|
| Q |
200 |
ga-aaaatgttagaagttgaaactgatga |
227 |
Q |
| |
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|| |||||||||||||||||||| ||||| |
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| T |
4411065 |
gaaaaaatgttagaagttgaaacagatga |
4411037 |
T |
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