View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_33 (Length: 237)
Name: NF16557_low_33
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 17090996 - 17090794
Alignment:
| Q |
20 |
gttgtgtattaacatgtatggaatgattgactatatcatgtatttaggaatagggaagtaattgtctagtctttgggttttggtgatcaaggttcaaaat |
119 |
Q |
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| T |
17090996 |
gttgtgtatcaacatgtatggaatgatggactatatcatgtatttaggaatagggaagtaattgtctagtctttgggttttggcgatcaagggtcaaaat |
17090897 |
T |
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| Q |
120 |
cttgtgatcgaaatagcagccctttataaatgatataaatgcacacatttatattattggagacattacttggacatttacacatcaaaactatagtaat |
219 |
Q |
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| T |
17090896 |
ctagtgatcgaaatagcagccctttataaatgatataaatgcacacatttatattattggagacattaattggacatttatacatcaaaactataataat |
17090797 |
T |
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| Q |
220 |
aaa |
222 |
Q |
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| T |
17090796 |
aaa |
17090794 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 36494964 - 36494898
Alignment:
| Q |
145 |
ataaatgatataaatgcacacatttatattattggagacattacttggacatttacacatcaaaact |
211 |
Q |
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| T |
36494964 |
ataaatgatataaatgcacacatttttaaaattggagacattaattgaacatttatacaccaaaact |
36494898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 7921228 - 7921302
Alignment:
| Q |
147 |
aaatgatataaatgcacacatttatattattggagacattacttggacatttacacatcaaaactatagtaataa |
221 |
Q |
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| T |
7921228 |
aaatgatattaatgcacacatttctaaaattgaagacattaattggacatttatatatcaaaactttggtaataa |
7921302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 12802198 - 12802132
Alignment:
| Q |
152 |
atataaatgcacacatttatattattggagacattacttggacatttacacatcaaaactatagtaa |
218 |
Q |
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| T |
12802198 |
atataaatgcacatatttctaaaatttgagacattaattagacatttatacaccaaaactatagtaa |
12802132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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