View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16557_low_38 (Length: 211)
Name: NF16557_low_38
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_38 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7023412 - 7023202
Alignment:
| Q |
1 |
atttgggcaaaggaacatgaccttcctcaatttgcttcaaatcttcaactaacatctcataatgctttttcacttcctcaactgtcttccctccaacagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7023412 |
atttgggcaaaggaacatgaccttcctcaatttgcttcaaatcttcaactaacatctcataatgccttttcacttcctcaactgtcttccctccaacagc |
7023313 |
T |
|
| Q |
101 |
ccttgctagcttctgccacctatctggggtgtccttgtcatagatggccaaagcattctcaaatcttttgttctgctttgttgtccaagctgaacttgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7023312 |
ccttgctagcttctgccacctatctggggtgtccttgtcatagatggccaaagcattctcaaatcttttgttctgctttgttgtccaagctgaacttgag |
7023213 |
T |
|
| Q |
201 |
gacattctagc |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
7023212 |
gacattctagc |
7023202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 52365486 - 52365354
Alignment:
| Q |
56 |
ctcataatgctttttcacttcctcaactgtcttccctccaacagcccttgctagcttctgccacctatctggggtgtccttgtcatagatggccaaagca |
155 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||| ||||| || || | ||||||||| ||| || ||||||||||| | || ||||| ||| |
|
|
| T |
52365486 |
ctcataatgccttttcacttcttcaacagtcttccctcccacagctctagccaccttctgccaaagatcaggagtgtccttgtccaacattgccaacgca |
52365387 |
T |
|
| Q |
156 |
ttctcaaatcttttgttctgctttgttgtccaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52365386 |
ttctcaaatcttttgttctgctttgttgtccaa |
52365354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University