View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16557_low_40 (Length: 209)
Name: NF16557_low_40
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_40 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6292285 - 6292109
Alignment:
| Q |
18 |
agatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6292285 |
agatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaag |
6292186 |
T |
|
| Q |
118 |
cattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6292185 |
cattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
6292109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 32856551 - 32856688
Alignment:
| Q |
28 |
taggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatcca |
127 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||| |||| ||| || || |||| ||||| ||||| ||||| |||||||||| ||| |
|
|
| T |
32856551 |
taggatcaaccattccttggttaggattaaataatacatagtctaaagatatttgattagggtcattcttataagcaaaataaggataagcattgaccca |
32856650 |
T |
|
| Q |
128 |
aaaaggtgcttttgttgtttgcaagaagttcaaaaatt |
165 |
Q |
| |
|
||| |||| ||||||| || ||| ||||||||||||| |
|
|
| T |
32856651 |
aaagggtgattttgtttttgacaaaaagttcaaaaatt |
32856688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University