View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16557_low_6 (Length: 520)
Name: NF16557_low_6
Description: NF16557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16557_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 27741767 - 27741517
Alignment:
| Q |
11 |
catcatcattgtaccttcttggatcatcattgtgatgtctctgaggcctgccatgggtttcatgtcttctaggccttggtacattctcagtttcctcgtc |
110 |
Q |
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| T |
27741767 |
catcatcattgtaccttcttggatcatcattgtgatgtctccgaggcctgccatgggtttcatgtcttctaggccttggtacactctcagtttcctcatc |
27741668 |
T |
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| Q |
111 |
actttcctcatcatgaggccttccatgtggcctagcatgtaccaactcctgcctcaaagcattcatttgagtattcatcattctagtcatttttgccatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27741667 |
cctttcctcatcatgaggccttccatgtggcctagcatgtaccaactcctgcctcaaagcattcatttgagtattcatcattctagtcatttttgtcatg |
27741568 |
T |
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| Q |
211 |
agagaattcgtccttggtgatagaggtggggagtcaccgctatccatatct |
261 |
Q |
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| T |
27741567 |
agagaattcgtccttggtgatagaggtggggagtcaccgctatccatatct |
27741517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 330 - 502
Target Start/End: Complemental strand, 27741448 - 27741276
Alignment:
| Q |
330 |
gattgggcctcaccacgcgctaagtgtttacactcgataagattcactcgtgtatatcactcaacaaggcttttgtgtaatgtaaactatcttgcctttt |
429 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27741448 |
gattgggcctcaccactcgctaagtgtttacactcgataagattcactcgtgattgggcctcaacaaggcttttgtgtaatgtaaactctcttgcctttt |
27741349 |
T |
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| Q |
430 |
accactccctaattgctcgatcatatgattcttacaagaccaaatcatgcccaatcaagcttgttgtaaacat |
502 |
Q |
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| T |
27741348 |
accactccctaattgatcgatcatatgattcttacaagaccaaatcatgcccaatcaagcttgttgtaaacat |
27741276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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