View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16558_high_1 (Length: 651)

Name: NF16558_high_1
Description: NF16558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16558_high_1
NF16558_high_1
[»] chr7 (10 HSPs)
chr7 (277-634)||(27249590-27249948)
chr7 (87-212)||(27251233-27251358)
chr7 (342-421)||(27282409-27282488)
chr7 (548-634)||(27282224-27282310)
chr7 (548-633)||(27272155-27272239)
chr7 (558-634)||(27296657-27296733)
chr7 (328-405)||(27272679-27272756)
chr7 (58-215)||(27282547-27282698)
chr7 (350-421)||(27243872-27243942)
chr7 (164-215)||(27272828-27272879)
[»] chr1 (4 HSPs)
chr1 (350-513)||(14883523-14883685)
chr1 (159-215)||(14888948-14889005)
chr1 (414-634)||(14889212-14889426)
chr1 (549-634)||(14883689-14883775)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 277 - 634
Target Start/End: Complemental strand, 27249948 - 27249590
Alignment:
Q  277 ctgtcaatataattaacttcgtgcatcatacaattacaagtacacgctaatgtgataattattgcaaaatgttactaattcaattcaatgtaagaattaa 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27249948 ctgtcaatataattaacttcgtgcatcatacaattacaagtacacgctaatgtgataattattgcaaaatgttactaattcaattcaatgtaagaattaa 27249849  T
Q  377 gagagatgattgtaaatccaaatgtccatcatatattgaatatttcgatctgaaacatttaaggtttaaatttaattatacacagtgatccatagtggag 476  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  27249848 gagagatgattgtaaatcaaaatgtccatcatatattgaatatttcgatctgaaaaatttaaggtttaaatttaattatacacagtgatccatagtgggg 27249749  T
Q  477 attcagtaattacaacttacaacagtagaaattaagctatcc----nnnnnnnnngttgtaagactaaagtcatccctttattccgtctgtattggttat 572  Q
    ||||||   |||||||||||||| ||||||||||||||||||              |||||||| ||||||||||||||||||| |||||||||||||||    
T  27249748 attcag---ttacaacttacaaccgtagaaattaagctatccttttttttttttttttgtaagagtaaagtcatccctttattctgtctgtattggttat 27249652  T
Q  573 taccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagt 634  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27249651 taccacaaaccaagtattccttattcattaagcactaacccttcaagctgctcgatactagt 27249590  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 27251358 - 27251233
Alignment:
Q  87 tctcaaaaaggaataataaaaatgttagagaaaaccaaacaacaaatttcacaggttcattataatgtaaaccccctatcttcttccctctagacaatcc 186  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27251358 tctcaaaaaggaataataaaaatgttacagaaaaccaaacaacaaatttcactggttcattataatgtaaaccccctatcttcttccctctagacaatcc 27251259  T
Q  187 gattaagattgttaatcttttatttt 212  Q
    ||||||||||||||||||||| ||||    
T  27251258 gattaagattgttaatcttttttttt 27251233  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 27282488 - 27282409
Alignment:
Q  342 aaaatgttactaattcaattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatattt 421  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |||||    
T  27282488 aaaatgtaactaattcaattcaatgtaagaattaagagagatgatggtaaatccaaatgtgcatcagatattgattattt 27282409  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 548 - 634
Target Start/End: Complemental strand, 27282310 - 27282224
Alignment:
Q  548 cctttattccgtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagt 634  Q
    ||||||||| ||||||||||||||||| |||||||||||||||  ||||| | ||||||| ||||||||||||||||| ||||||||    
T  27282310 cctttattctgtctgtattggttattagcacaaaccaagtattacttattgaataagcaccaacccttcaagctgctcaatactagt 27282224  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 548 - 633
Target Start/End: Complemental strand, 27272239 - 27272155
Alignment:
Q  548 cctttattccgtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactag 633  Q
    ||||||||| |||| |||||||| |||||||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||    
T  27272239 cctttattctgtctatattggtt-ttaccacaaaccaagtattacttattcattaagcaccaacccttcaagctgctcaatactag 27272155  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 634
Target Start/End: Complemental strand, 27296733 - 27296657
Alignment:
Q  558 gtctgtattggttattaccacaaaccaagtattcgttattcattaagcactaacccttcaagctgctcgatactagt 634  Q
    ||||||||||||||||| |||||||||||||||  ||||||| ||||||| |||||||||||| |||| ||||||||    
T  27296733 gtctgtattggttattagcacaaaccaagtattacttattcactaagcaccaacccttcaagcagctcaatactagt 27296657  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 27272756 - 27272679
Alignment:
Q  328 gtgataattattgcaaaatgttactaattcaattcaatgtaagaattaagagagatgattgtaaatccaaatgtccat 405  Q
    |||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||  ||| |||| |||||||||    
T  27272756 gtgataattactgtaaaatgtaactaattcaattcaatgtaagaattatgagagatgacagtacatcctaatgtccat 27272679  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 27282698 - 27282547
Alignment:
Q  58 gaaaaagactagaataattgggaaaaggctctcaaaaaggaataataaaaatgttagagaaaaccaaacaacaaatttcacaggttca-ttataatgtaa 156  Q
    |||||||||||||||||| |||||||| ||||||||  |||||||| ||||||||||||||| ||||||||           ||| || |||||||||||    
T  27282698 gaaaaagactagaataat-gggaaaagactctcaaa--ggaataatgaaaatgttagagaaacccaaacaa-----------ggtacaattataatgtaa 27282613  T
Q  157 ---accccct----atcttcttccctctagacaatccgattaagattgttaatcttttattttgtc 215  Q
       |||||||    |||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  27282612 cccacccccttttgatcttcttccctctagattatccgattaagattgttaatcttttattttgtc 27282547  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 27243942 - 27243872
Alignment:
Q  350 actaattcaattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatattt 421  Q
    |||||| ||||| ||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||    
T  27243942 actaatacaattaaatgtaagaattaagagagatggcgctaaatccaaatgtccatc-tatattgaatattt 27243872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 27272879 - 27272828
Alignment:
Q  164 atcttcttccctctagacaatccgattaagattgttaatcttttattttgtc 215  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  27272879 atcttcttcccactagataatccgattaagattgttaatctcttaatttgtc 27272828  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 350 - 513
Target Start/End: Original strand, 14883523 - 14883685
Alignment:
Q  350 actaattcaattcaatgtaagaattaagagagatgattgtaaatccaaatgtccatcatatattgaatatttcgatctgaaacatttaaggtttaaattt 449  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||| |||||||||||||| |  ||| | |||    
T  14883523 actaattcaattcaatgtaagaattaagagagatggcagtaaatccaaatgtccatcatatatttaatattttgatctgaaacatttcaaattttatttt 14883622  T
Q  450 aat--tatacacagtgatccatagtggagattcagtaattacaacttacaacagtagaaattaagc 513  Q
     ||  |||| | |||||||| |||||| |||||||   |||||||||||||| | |||||||||||    
T  14883623 tattatatatatagtgatccctagtggggattcag---ttacaacttacaactgaagaaattaagc 14883685  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 14888948 - 14889005
Alignment:
Q  159 cccctatcttcttccctctagacaatccgatt-aagattgttaatcttttattttgtc 215  Q
    |||| ||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  14888948 ccccgatcttctaccctctagataatccgattaaagattgttaatcttatattttgtc 14889005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 634
Target Start/End: Original strand, 14889212 - 14889426
Alignment:
Q  414 gaatatttcgatctgaaacatttaaggtttaaatttaattatacacagtgatccatagtggagattcagtaattacaacttacaacagtagaaattaagc 513  Q
    |||||||| |||||||||||||| || ||| | |||||||||| | |||||||| |||||| ||||||||   ||||| |||||||   |||||||||||    
T  14889212 gaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagt---tacaagttacaaccagagaaattaagc 14889308  T
Q  514 tatccnnnnnnnnngttgtaagactaaagtcatcc-ctttattccgtctgtattggttattaccacaaaccaagtatt-cgttattcattaagcactaac 611  Q
     |||           || ||||| ||||||||||| |||||||| |||  ||||||||||||||  ||||||| |||| | |||||||||||||   |||    
T  14889309 -atcttttttt----ttataagagtaaagtcatcctctttattctgtcgatattggttattaccgaaaaccaattattactttattcattaagcttcaac 14889403  T
Q  612 ccttcaagctgctcgatactagt 634  Q
    ||| ||||||||||  |||||||    
T  14889404 cctgcaagctgctcagtactagt 14889426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 634
Target Start/End: Original strand, 14883689 - 14883775
Alignment:
Q  549 ctttattccgtctgtattggttattaccacaaaccaagtatt-cgttattcattaagcactaacccttcaagctgctcgatactagt 634  Q
    |||||||| ||| |||||||||||||||| ||||||| |||| | ||||||||||| |   |||||| ||||||||||  |||||||    
T  14883689 ctttattctgtcggtattggttattaccaaaaaccaattattactttattcattaaccttcaaccctgcaagctgctcagtactagt 14883775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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