View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16558_low_3 (Length: 422)
Name: NF16558_low_3
Description: NF16558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16558_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 39710972 - 39711180
Alignment:
| Q |
15 |
tcaataaccgagtcttagaagaa--gtaagtgcaatgtagatgtgtcgttttcggactctctgaaccgtgttggatttggtatgtgtcttcgagatgaca |
112 |
Q |
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| T |
39710972 |
tcaaaaaccgagtcttagaagaattgtaagtgcaatgtagatgtgtcgttttcgaactctctgaaccgtgttggatttagtatgtgtcttcgagatgaca |
39711071 |
T |
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| Q |
113 |
cttagaattttgtgaaagccaagacgatgtggactagtcacgtatgtgatacggttgtaggggaagcatcagggctgtcatacacaatccagtgggttca |
212 |
Q |
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| T |
39711072 |
ctgagaattttgtgaaagccaagacgatgcggactagtcccgtatgtgatacggttgtaggggaagcatcagggctgtcatacacaatccagtggattca |
39711171 |
T |
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| Q |
213 |
agaattaca |
221 |
Q |
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| T |
39711172 |
agaattaca |
39711180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 217 - 406
Target Start/End: Original strand, 39711515 - 39711700
Alignment:
| Q |
217 |
ttacatgaaatattttatttgcaagtaatatcaaaagcatttgatttggtgtagtgaaattgcaactgaagtataagcatgtgtatttattttatttgca |
316 |
Q |
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| T |
39711515 |
ttacatgaaatattttatttgcaagtaatatcaaaagcatttgatttggtgtagtgaaattgcaactgaagtataagcatgtg----tattttacttgca |
39711610 |
T |
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| Q |
317 |
agcaatatcaaaagttatattttttaacaaacacattatactacaatgatcgaatta-ttaataatgagag-aaaaacactaacaagtcaca |
406 |
Q |
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| T |
39711611 |
agcaatatcaaaagttatattttttaacaaacacattatact--aatgatcgaattatttaataatgagagaaaaaacactaacaagccaca |
39711700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 22278015 - 22277953
Alignment:
| Q |
83 |
ttggatttggtatgtgtcttcgagatgacacttagaattttgtgaaagccaagacgatgtgga |
145 |
Q |
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| T |
22278015 |
ttggatttggcatgtgtcttcgagacgacatcgagaattttgtgaaagccaagatgatgtgga |
22277953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 39711469 - 39711501
Alignment:
| Q |
234 |
tttgcaagtaatatcaaaagcatttgatttggt |
266 |
Q |
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| T |
39711469 |
tttgcaagtaatatcaaatgcatttgatttggt |
39711501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 8030536 - 8030577
Alignment:
| Q |
231 |
ttatttgcaagtaatatcaaaagcatttgatttggtgtagtg |
272 |
Q |
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| T |
8030536 |
ttatttgcaagtaaaatcaaaagcatttgatttggtgcagtg |
8030577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 30211978 - 30211936
Alignment:
| Q |
230 |
tttatttgcaagtaatatcaaaagcatttgatttggtgtagtg |
272 |
Q |
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| T |
30211978 |
tttatttgcaagtagtatcaaatgcatttgatttggtttagtg |
30211936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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