View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16558_low_5 (Length: 251)
Name: NF16558_low_5
Description: NF16558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16558_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31602738 - 31602503
Alignment:
| Q |
1 |
atttcagacatggacatactagttactccatgcagatatggtctctcttagacatggatatttttcattgtaaatcaaaaactcagggtgtacagtagaa |
100 |
Q |
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| T |
31602738 |
atttcagacatggacatactagttactccatgcagatatggtctctcttagacatggatatttttcattgtaaatcaaaaactcagggtgtacagtagaa |
31602639 |
T |
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| Q |
101 |
agagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattgatacgtacaacaattcatctctccatcagtggctctagaagttgtaatac |
200 |
Q |
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| T |
31602638 |
agtgatgaccaacgatgaacgaaaatactttcttcgaccatgcatgatggatacgtacgacaattcatctctccatcagtggctctagaagttgtaatac |
31602539 |
T |
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| Q |
201 |
gtttagcaatcctatcttcccaaaccagcacatatt |
236 |
Q |
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| T |
31602538 |
gtttagcaatcctatcttcccaaaccagcacatatt |
31602503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 237
Target Start/End: Complemental strand, 31605110 - 31604938
Alignment:
| Q |
64 |
ttcattgtaaatcaaaaactcagggtgtacagtagaaagagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattgatacgtacaacaa |
163 |
Q |
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| T |
31605110 |
ttcattgtaaatcaaaaactcatggtgtagaatagaaactgatggccaacgatgaaggaaaatactttcttcgaccatgcatgattg----gtatgagaa |
31605015 |
T |
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| Q |
164 |
ttcatctctccatcagtggctct---agaagttgtaatacgtttagcaatcctatcttcccaaaccagcacatattg |
237 |
Q |
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| T |
31605014 |
ttcatctctccatcaggggccctagaagaagttgtaatacgtttagcaatcctatctgcccaaaccagcacgtattg |
31604938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 49778303 - 49778213
Alignment:
| Q |
64 |
ttcattgtaaatcaaaaactcagggtgtacagtagaaagagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattgatac |
154 |
Q |
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||||||||||| || |||||| |||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||||| |||||| |
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| T |
49778303 |
ttcattgtaaaccagaaactcggggtgtacagtagaaactgatgaccaacgatgaatgaaaatactttcatcaaccatgcatgactgatac |
49778213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 7991009 - 7991098
Alignment:
| Q |
65 |
tcattgtaaatcaaaaactcagggtgtacagtagaaagagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattgatac |
154 |
Q |
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|||||||||| || |||||| ||| |||||||||| | |||||||||||||||| |||||||||||| || ||||||||||| |||||| |
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| T |
7991009 |
tcattgtaaaccagaaactcggggcgtacagtagagaccgatgaccaacgatgaatgaaaatactttcatcaaccatgcatgactgatac |
7991098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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