View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16558_low_6 (Length: 237)

Name: NF16558_low_6
Description: NF16558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16558_low_6
NF16558_low_6
[»] chr3 (9 HSPs)
chr3 (1-237)||(24359208-24359444)
chr3 (25-233)||(24362748-24362956)
chr3 (26-232)||(24346797-24347003)
chr3 (25-237)||(24355903-24356115)
chr3 (22-233)||(24370307-24370518)
chr3 (25-237)||(24352498-24352710)
chr3 (22-100)||(24364158-24364236)
chr3 (164-237)||(24364021-24364094)
chr3 (72-108)||(24403613-24403649)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 24359208 - 24359444
Alignment:
Q  1 atgctatgcagtatgtaaatgcagatttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaatt 100  Q
    |||||||||||| ||||  |  ||||||||||||  |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  24359208 atgctatgcagtttgtacctttagatttaaaagggattattgagaacaaagagaagaatgttcttctgcagattgggaaaaaatcatggaatgtgaaatt 24359307  T
Q  101 gctccgttattccgagattttaaatggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtcttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  24359308 gctccgttattccgagattttaaatggtcgccgcctatcggccggttgatccttgtttgcaagtgaaagtggactaaaacatggagatgtttgtgtcttt 24359407  T
Q  201 gagctcataaacaaggaagatttagtttttaaagttc 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  24359408 gagctcataaacaaggaagatttagtttttaaagttc 24359444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 24362748 - 24362956
Alignment:
Q  25 atttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa 124  Q
    ||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||  |  |||    
T  24362748 atttagaaggggttattgagaacaaagagaagtatgtggttctgcagattgggaaaagatcatggaatgtgaaattgctccgttattacgaggctaaaaa 24362847  T
Q  125 tggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagattta 224  Q
    |||||||| |||||| || |||||||||||||||||  |||||||||||||  ||   |||||||||||||||||||| || | ||||||| ||||||||    
T  24362848 tggtcgccacctatcagcaggttggtccttgtttgcaagtgaaagtggactgcaatcgggagatgtttgtgtctttgaactgacaaacaagcaagattta 24362947  T
Q  225 gtttttaaa 233  Q
    |||||||||    
T  24362948 gtttttaaa 24362956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 24346797 - 24347003
Alignment:
Q  26 tttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaat 125  Q
    |||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||| |||||||||||| ||||| ||||  |  ||||    
T  24346797 tttaaatggggttattgagaacaaagaaaagtatgtgatgctgcagattgggaaaagatcatggaatctgaaattgctcccttattgcgaggctagaaat 24346896  T
Q  126 ggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttag 225  Q
    | ||||||||| |||||||||||||||||||||||| | |||||||||||  ||   |||||||||||||||||||| || ||||||||| | ||||| |    
T  24346897 gttcgccgcctttcggccggttggtccttgtttgctagagaaagtggactgcaagcaggagatgtttgtgtctttgaactgataaacaagaaggatttgg 24346996  T
Q  226 tttttaa 232  Q
    |||||||    
T  24346997 tttttaa 24347003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 24355903 - 24356115
Alignment:
Q  25 atttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa 124  Q
    |||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||| |||  | | ||       |    
T  24355903 attttaaaggggttattgagaacaaagagaaggatgtgatgcttcagattgggaaaagatcatggaatgtgaaattgctctgttggtacaagcacactca 24356002  T
Q  125 tggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagattta 224  Q
     ||||| ||||| |||||| | ||||||||||||||  | |||||||||||  |||| ||| ||||||||||||| || || ||||||||||||| ||||    
T  24356003 gggtcgtcgcctttcggccagatggtccttgtttgcaagagaaagtggactgcaacaaggaaatgtttgtgtcttcgaactgataaacaaggaaggttta 24356102  T
Q  225 gtttttaaagttc 237  Q
    |||||||||||||    
T  24356103 gtttttaaagttc 24356115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 24370307 - 24370518
Alignment:
Q  22 cagatttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagatttt 121  Q
    ||||||||||||| |||||||||||||| || |   ||||||| |||| ||||||||||| |||||||||||||||| | || |||| ||  |||         
T  24370307 cagatttaaaaggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaactacttcgttcttatgagggcaa 24370406  T
Q  122 aaatggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagat 221  Q
    |||||| || ||||| || || || |||| ||| |||||  | ||||||||||| |||   ||||||||||||||||||||  | ||||||||| |||||    
T  24370407 aaatggccgtcgcctttccgcgggctggtacttatttgcaagagaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagat 24370506  T
Q  222 ttagtttttaaa 233  Q
    || |||||||||    
T  24370507 ttggtttttaaa 24370518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 24352498 - 24352710
Alignment:
Q  25 atttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaattgctccgttattccgagattttaaa 124  Q
    ||||||| || |||||||||||||| |||||| || || | || ||||||||  ||| ||||||||| |||||||||||   || || ||||  |   |     
T  24352498 atttaaagggggttattgagaacaaggagaagaatctggtgcttcagattggagaaagatcatggaaggtgaaattgcttgcttcttacgagcgtgagac 24352597  T
Q  125 tggtcgccgcctatcggccggttggtccttgtttgctcgtgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagattta 224  Q
     ||||| ||||| || ||||| ||||||||||| |    ||| ||||||||  ||| || | |||||||||||||||| || |||||||||||| |||||    
T  24352598 gggtcgtcgcctttcagccggctggtccttgttcgtaaatgagagtggactgcaacctgaaaatgtttgtgtctttgaactgataaacaaggaaaattta 24352697  T
Q  225 gtttttaaagttc 237  Q
    |||||||||||||    
T  24352698 gtttttaaagttc 24352710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 24364236 - 24364158
Alignment:
Q  22 cagatttaaaaggagttattgagaacaaagagaagcatgtgattctgcagattgggaaaaaatcatggaatgtgaaatt 100  Q
    ||||||||||||| |||||||||||||| || |   ||||||| |||| ||||||||||| ||||||||||||||||||    
T  24364236 cagatttaaaaggggttattgagaacaaggacacaaatgtgatgctgctgattgggaaaagatcatggaatgtgaaatt 24364158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 24364094 - 24364021
Alignment:
Q  164 tgaaagtggactaaaacatggagatgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttc 237  Q
    |||||||||||| |||   ||||||||||||||||||||  | ||||||||| ||||||| |||||||||||||    
T  24364094 tgaaagtggactgaaatcaggagatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttc 24364021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 24403613 - 24403649
Alignment:
Q  72 attgggaaaaaatcatggaatgtgaaattgctccgtt 108  Q
    |||||||||| | ||||||||||||||||||||||||    
T  24403613 attgggaaaagaacatggaatgtgaaattgctccgtt 24403649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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