View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16558_low_7 (Length: 216)
Name: NF16558_low_7
Description: NF16558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16558_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 47151875 - 47151691
Alignment:
| Q |
16 |
cagtttcaacaatagcttcccacattcatccaccttgtcctgtaaccattccacattaacattaattatatactatagtaactatacttttaaatattag |
115 |
Q |
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| T |
47151875 |
cagtttcaacaatagcttcccacattcatccaccttgtcctgtaaccattccacattaacattaattatatactatact---tttaaatattagtattag |
47151779 |
T |
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| Q |
116 |
ttcttctattctatataacgaaggacggnnnnnnncacttactttgttgattccaagaataccaagaagctgggtttgatattcatctc |
204 |
Q |
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| T |
47151778 |
ttcttctattctatataacgaaggacgg-aaaaaacacttactttgttgattccaagaataccaagaagctgggtttgatattcatctc |
47151691 |
T |
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