View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1655_high_2 (Length: 433)
Name: NF1655_high_2
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 46642437 - 46642016
Alignment:
| Q |
1 |
tggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataat |
100 |
Q |
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| T |
46642437 |
tggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggaaattaagagttttggactataagaggattccattaccgataat |
46642338 |
T |
|
| Q |
101 |
ggatgggtttgattttgtgttatgggaatgcgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttgttgtgctgcaaattgaca |
200 |
Q |
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| T |
46642337 |
ggatgggtttgattttgtgttatgggaatgtgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttgttgtgctgcaaattgacg |
46642238 |
T |
|
| Q |
201 |
ttactcttataaaataataatgtaattggtttggttagacatttaaatggtgtgacatataggttatccataaaagaatggtaggtaattaatcttaaca |
300 |
Q |
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| T |
46642237 |
ttactcttataaaataataatgtaattggtttggttagacgtttaaatggtgtgacatctaggttacctataaaagaatagtaggtaatttatactaacg |
46642138 |
T |
|
| Q |
301 |
aatgaaaatattcacatttttaggtggtatccttcatggatttcgtgcatgtggatttcctccggtggaaatctctcccatcttctgcagtgacataatt |
400 |
Q |
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| T |
46642137 |
aat--aaatattcacatttttaagtggtatccttcatggatttcgtgcatgtggatttccttcggtggaaatctctccaatcctctgcagtgacataatt |
46642040 |
T |
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| Q |
401 |
tgcaccattaattttcttctctct |
424 |
Q |
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| T |
46642039 |
tacaccattaattatcttctctct |
46642016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 46640145 - 46639893
Alignment:
| Q |
1 |
tggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640145 |
tggtggtagagattggtgtgatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataat |
46640046 |
T |
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| Q |
101 |
ggatgggtttgattttgtgttatgggaatgcgaatttatataa---atgtgtgtatgttggagaaatattggaagttagtgtttgttgtgctgcaaattg |
197 |
Q |
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| T |
46640045 |
ggatgggtttgattttgtgttatgggaatgtgaatttatataaggggtgtgtgtatgttggagaaattttggaagtttctgtttgttgtgctgcaaattg |
46639946 |
T |
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| Q |
198 |
acattactcttataaaataataat---gtaattggtttggttagacatttaaa |
247 |
Q |
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| T |
46639945 |
acattactcttataaaataataatagagtgattggtttggttagacatttaaa |
46639893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 29966171 - 29966101
Alignment:
| Q |
352 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
422 |
Q |
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| T |
29966171 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
29966101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 30008627 - 30008697
Alignment:
| Q |
352 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
422 |
Q |
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| T |
30008627 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
30008697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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