View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1655_high_8 (Length: 304)
Name: NF1655_high_8
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 1869648 - 1869363
Alignment:
| Q |
1 |
caccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatcatttgtaaggtacataatgctc |
100 |
Q |
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| T |
1869648 |
caccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatcatttgtaaggtacataatgctc |
1869549 |
T |
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| Q |
101 |
taaaagagtctcatttttcttttaaaaaacatatgcggattgataacggctatttatataggaatatcggaaacactctctttcttaacactctctaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1869548 |
taaaagagtctcatttttcttttaaaaaacatatgcggattgataacggct-tttatataggaatatcggaaacactctctttcttaacactctctaata |
1869450 |
T |
|
| Q |
201 |
gtcactttcttatcgcatgaaatttagtgtggatactacaatttagaaatgtatttcatgtaaagtggtgaaacccacataagtttc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||| ||||||||||||||| |
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| T |
1869449 |
gtcactttcttatcgcatgaaatttagtgtggatactataatttagaaatgtatcccacgtaaagtgatgagacccacataagtttc |
1869363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 1916812 - 1916736
Alignment:
| Q |
2 |
accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
78 |
Q |
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|||||| || ||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
1916812 |
accttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatc |
1916736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 17488493 - 17488418
Alignment:
| Q |
3 |
ccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
78 |
Q |
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||||| || ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
17488493 |
ccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatc |
17488418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 17564721 - 17564796
Alignment:
| Q |
3 |
ccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
78 |
Q |
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||||| || ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
17564721 |
ccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatc |
17564796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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