View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1655_low_1 (Length: 535)

Name: NF1655_low_1
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1655_low_1
NF1655_low_1
[»] chr1 (3 HSPs)
chr1 (2-331)||(5569135-5569462)
chr1 (425-513)||(5569556-5569644)
chr1 (275-323)||(9266106-9266154)
[»] scaffold0050 (1 HSPs)
scaffold0050 (252-323)||(12866-12937)
[»] scaffold0236 (1 HSPs)
scaffold0236 (467-500)||(6231-6264)
[»] chr7 (3 HSPs)
chr7 (273-314)||(2040108-2040149)
chr7 (235-330)||(1633295-1633390)
chr7 (273-317)||(3399581-3399625)
[»] chr2 (1 HSPs)
chr2 (273-323)||(3914275-3914325)
[»] chr8 (1 HSPs)
chr8 (252-312)||(2631743-2631803)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 331
Target Start/End: Original strand, 5569135 - 5569462
Alignment:
Q  2 aaatggtaccacatatgcagctgatgtgtcaaaaaatgtgacacatcatcacaactagtagaataatagatgtcaataaactgattaactaagtgattca 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569135 aaatggtaccacatatgcagctgatttgtcaaaaaatgtgacacatcatcacaactagtagaataatagatgtcaataaactgattaactaagtgattca 5569234  T
Q  102 agaagnnnnnnnnnnnnnnnnaattcattcagagattattgtgacaccgcatgtcattcttccagacaaaagtggttgtttactccttaaaaatcatcac 201  Q
    |||||                ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5569235 agaagttttattttttttt--aattcattcagagattattgtgacaccgcatgtcattcttcgagacaaaagtggttgtttactccttaaaaatcatcac 5569332  T
Q  202 atgtctaatgaaaaatatattttttggatagttaggagagaggactagcgtcaagaggaaccaacggcgatccaactaggttgacaacccgatgaacctt 301  Q
    ||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  5569333 atgtctcctgaaaaatatattttttggatagtcaggagagatgactagcgtcaagaggaaccaacggcgttccaactaggttgataacccgatgaacctt 5569432  T
Q  302 catcctatgccgtcaatctcaataattttt 331  Q
    ||||||||||||||||||||||||||||||    
T  5569433 catcctatgccgtcaatctcaataattttt 5569462  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 425 - 513
Target Start/End: Original strand, 5569556 - 5569644
Alignment:
Q  425 ttaagggaatttgtaggtagacagaccatatctgtctatgtggaaatcaaagtgtaaaacaggcagtaattcagtcttatttaaagcaa 513  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569556 ttaagggaatttgtaggtagacagaccatatctgtctctgtggaaatcaaagtgtaaaacaggcagtaattcagtcttatttaaagcaa 5569644  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 9266106 - 9266154
Alignment:
Q  275 aactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaa 323  Q
    |||||||| |||||||||| |||||| |||||||||||| ||| |||||    
T  9266106 aactaggtagacaacccgaagaacctccatcctatgccgccaaactcaa 9266154  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 12866 - 12937
Alignment:
Q  252 tcaagaggaaccaacggcgatccaactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaa 323  Q
    |||||||||| ||||| |  | |||||||||||||| ||||| |||||| |||| |||||||||||||||||    
T  12866 tcaagaggaagcaacgacatttcaactaggttgacatcccgaagaacctccatcatatgccgtcaatctcaa 12937  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 6264 - 6231
Alignment:
Q  467 gaaatcaaagtgtaaaacaggcagtaattcagtc 500  Q
    ||||||||||||||||||||||||||||||||||    
T  6264 gaaatcaaagtgtaaaacaggcagtaattcagtc 6231  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 2040108 - 2040149
Alignment:
Q  273 ccaactaggttgacaacccgatgaaccttcatcctatgccgt 314  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  2040108 ccaactaggttggcatcccgatgaaccttcatcctatgccgt 2040149  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 1633390 - 1633295
Alignment:
Q  235 aggagagaggactagcgtcaagaggaaccaacggcgatccaactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaataatttt 330  Q
    ||||||||||||  || |||||||||| || || | ||||||||||||||||| |||||  |||||  ||||||||||| ||| ||| | ||||||    
T  1633390 aggagagaggacatgcatcaagaggaaacaccgacaatccaactaggttgacaccccgagaaacctcaatcctatgccgccaaactctaaaatttt 1633295  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 3399581 - 3399625
Alignment:
Q  273 ccaactaggttgacaacccgatgaaccttcatcctatgccgtcaa 317  Q
    |||||||||||| || |||||  ||||||||||||||||||||||    
T  3399581 ccaactaggttggcaccccgagaaaccttcatcctatgccgtcaa 3399625  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 3914275 - 3914325
Alignment:
Q  273 ccaactaggttgacaacccgatgaaccttcatcctatgccgtcaatctcaa 323  Q
    |||||||||||| || ||||||||||  ||||||||| |||||||||||||    
T  3914275 ccaactaggttggcaccccgatgaactctcatcctataccgtcaatctcaa 3914325  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 2631803 - 2631743
Alignment:
Q  252 tcaagaggaaccaacggcgatccaactaggttgacaacccgatgaaccttcatcctatgcc 312  Q
    |||||||||| ||||| |  ||| ||||||||| || ||||||||| ||||||||||||||    
T  2631803 tcaagaggaagcaacgacattccgactaggttggcaccccgatgaatcttcatcctatgcc 2631743  T

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