View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1655_low_12 (Length: 223)

Name: NF1655_low_12

Description: NF1655

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1655_low_12

[»] chr7 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 192; E-Value: 1e-104

Query Start/End: Original strand, 19 - 210

Target Start/End: Original strand, 3947281 - 3947472

Alignment:

Q	19	gttatcaggctcaacagggtcaatagttacagcttctgaaggcttgttttcaggttcagcctcagttgcagtttctgtgggattgttttcaggttctacc	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3947281	gttatcaggctcaacagggtcaatagttacagcttctgaaggcttgttttcaggttcagcctcagttgcagtttctgtgggattgttttcaggttctacc	3947380	T

Q	119	cagaattcagttttctttccagttttggaaacagtgtcaaaaacatcttgtggctttacatttcctttcacagtcactttttgttccttcat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3947381	cagaattcagttttctttccagttttggaaacagtgtcaaaaacatcttgtggctttacatttcctttcacagtcactttttgttccttcat	3947472	T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 160 - 206

Target Start/End: Original strand, 18602683 - 18602729

Alignment:

Q	160	aacatcttgtggctttacatttcctttcacagtcactttttgttcct	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	18602683	aacatcttgtgggtttacatttcctttaacagtcaccttttgttcct	18602729	T

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