View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1655_low_3 (Length: 397)
Name: NF1655_low_3
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655_low_3 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 10795534 - 10795913
Alignment:
| Q |
1 |
tttccaggacttgaacccgtgggatcggtttatttgagtaccacattatattttgttatagaaattaataagcacttatatgatgaacactggattttta |
100 |
Q |
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| T |
10795534 |
tttccaggacttgaacccgtgggatcggtttatttgagtatcacattatattttgttatagaaattaataagcacttatatgatgaacactggattttta |
10795633 |
T |
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| Q |
101 |
tgccgaatatgaaaaggagatgcagaaagctagagtgtcttaacctgaaaagcattttcaggacatccatagaagaatttggcaataattccagcactaa |
200 |
Q |
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| T |
10795634 |
tgccgaatatgaaaaggagatgcagaaagctagagtgtcttaacctgaaaagcattttcaggacatccatagaagaatttggcaataattccagcactaa |
10795733 |
T |
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| Q |
201 |
ttgcaggaggaggtttaagagaaacagttggagcaggaaaccaaactagtacaaaacctgttacaatgcctgttacctaagataaagtaacaaactgaat |
300 |
Q |
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| T |
10795734 |
ttgcaggaggaggtttaagagaaacagttggagcaggaaaccaaactagtacaaaacctgttacaatgcctgttacctaagataaagtaacaaactgaat |
10795833 |
T |
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| Q |
301 |
aagatggttaacaaattcttacataataaagaaactagatgaagttacatcagagtacaagttaaagcaaagattgtcag |
380 |
Q |
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| T |
10795834 |
aagatggttaacaaattcttacataataaagaaactagatgaagttacatcagagtacaagttaaagcaaagattgtcag |
10795913 |
T |
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Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 268
Target Start/End: Original strand, 57915 - 58043
Alignment:
| Q |
140 |
ttaacctgaaaagcattttcaggacatccatagaagaatttggcaataattccagcactaattgcaggaggaggtttaagagaaacagttggagcaggaa |
239 |
Q |
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| T |
57915 |
ttaacctgaaaagcattttcagggcagccgaagaagaatttagcaataagtccagcactgacggaaggtggtggtcgaagagaaacggtcggagcaggaa |
58014 |
T |
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| Q |
240 |
accaaactagtacaaaacctgttacaatg |
268 |
Q |
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| T |
58015 |
gccacacaagcataaaatctgctacaatg |
58043 |
T |
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