View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1655_low_5 (Length: 339)
Name: NF1655_low_5
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 32034650 - 32034350
Alignment:
| Q |
14 |
ataatacttagttttggaagaaacaatttttagtgatgataacaaggcctgagatctagtatcagtgtatcacaacaccgtgagatctcttgaacagata |
113 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
32034650 |
ataatacttagttttagaagtaacaatttttagtgatgataacaaggcctgagatctagtat------atcaaaacaccgtgagatctcttgaacagata |
32034557 |
T |
|
| Q |
114 |
ttaagaatatatttttcttaataatacatatttgagtacatttattaattattagcagatctcgtgacaaactattcgaatcttactaatgttgtgtaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32034556 |
ttaagaatatatttttcttaataatacatatttgagtacatttattaattattagcagatctcgtgacaaactattcgaatcttactaatgttgtgtaca |
32034457 |
T |
|
| Q |
214 |
ctagttctttattattagtgaaaaagattgaatcgatcattaacaaagaagttaagtatatataatatggttcaaaagatctgtgcaaataaaaaattat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32034456 |
ctagttctttattattagtgaaaaagattgaatcgatcattaacaaagaagttaagtatatataatatggttcaaaagatctgtgcaaataaaaaattat |
32034357 |
T |
|
| Q |
314 |
tcaaaac |
320 |
Q |
| |
|
||||||| |
|
|
| T |
32034356 |
tcaaaac |
32034350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University