View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1655_low_6 (Length: 324)
Name: NF1655_low_6
Description: NF1655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1655_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 31910379 - 31910682
Alignment:
| Q |
5 |
tagactataactataatctttatttttcaagatagacatctaattagtttagtttattagattaagacaccgagatatgaaatacgaaaacaacttttat |
104 |
Q |
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| T |
31910379 |
tagactataactataatctttatttttcaagatagacatctaattagtttagtttattagattaagacaccaaggtatgaaatacgagaacaacttttat |
31910478 |
T |
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| Q |
105 |
ctcattttgtaacacaatttagactataaatagtcagttaattgcaaccaaaattgtgagaaaactgaagggaattaagtcttcttctcaaagtaaccaa |
204 |
Q |
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| T |
31910479 |
ctcattttataacacaatttagactatcaatagtcagttaattgcaaccaaaattgtgagaaaactgaagggaattaagtcttcttctcaatgtaactaa |
31910578 |
T |
|
| Q |
205 |
aatcacttaaaaatgacatgtatattaaaagttatacggaaaatactatcaagatgtccaaaatacgagttgaaatattttatataaatcaataaattta |
304 |
Q |
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| T |
31910579 |
aatcacttaaaaatggcatgtatattaaaagttatacgg-aaatactatcaagatatccaaaatacgatttgcaatattttatataaatcaataaattta |
31910677 |
T |
|
| Q |
305 |
gcatg |
309 |
Q |
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||||| |
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| T |
31910678 |
gcatg |
31910682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 31911717 - 31911827
Alignment:
| Q |
10 |
tataactataatctttatttttcaagatagacatctaattagtttagtttattagattaagacaccgagatatgaaatacgaaaacaacttttatctcat |
109 |
Q |
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|||||||||||| |||||||| |||||||| || | ||| ||||||||||||||||||| ||| | | ||| |||| || |||||||||||||| || |
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| T |
31911717 |
tataactataatatttattttgtaagatagatatttcattggtttagtttattagattaatacatcaatgtattaaatttgacaacaacttttatctaat |
31911816 |
T |
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| Q |
110 |
tttgtaacaca |
120 |
Q |
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| T |
31911817 |
tttgtaacaca |
31911827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 55127489 - 55127589
Alignment:
| Q |
24 |
ttatttttcaagatagacatctaattagtttagtttattagattaagacaccgagatatgaaatacgaaaacaacttttatctcattttgtaacacaatt |
123 |
Q |
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|||||||||| ||||| |||| ||||| || |||||||||||||||| ||||| ||| ||||| || | |||||||| |||||||||||||||||||| |
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| T |
55127489 |
ttatttttcatgatagtcatccaattatttcagtttattagattaaggtaccgaaatacaaaatatgacagcaacttttgtctcattttgtaacacaatt |
55127588 |
T |
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| Q |
124 |
t |
124 |
Q |
| |
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| T |
55127589 |
t |
55127589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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