View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16560_high_1 (Length: 661)

Name: NF16560_high_1
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16560_high_1
NF16560_high_1
[»] chr6 (10 HSPs)
chr6 (349-500)||(3175924-3176075)
chr6 (15-221)||(3175429-3175625)
chr6 (234-350)||(3175785-3175901)
chr6 (34-166)||(28498317-28498450)
chr6 (34-166)||(29810728-29810861)
chr6 (290-333)||(30995101-30995144)
chr6 (40-78)||(15913927-15913965)
chr6 (37-166)||(26463185-26463315)
chr6 (40-100)||(7905252-7905312)
chr6 (40-100)||(31406887-31406947)
[»] chr4 (18 HSPs)
chr4 (580-640)||(52302868-52302928)
chr4 (40-138)||(10203630-10203729)
chr4 (34-137)||(30641523-30641625)
chr4 (34-78)||(29321286-29321330)
chr4 (34-78)||(30642527-30642571)
chr4 (34-137)||(32062592-32062696)
chr4 (34-78)||(40388487-40388531)
chr4 (34-78)||(41583612-41583656)
chr4 (40-100)||(54858917-54858977)
chr4 (35-78)||(11446274-11446317)
chr4 (40-94)||(39701272-39701326)
chr4 (40-89)||(52573596-52573645)
chr4 (40-100)||(11523958-11524018)
chr4 (34-78)||(32063717-32063761)
chr4 (34-78)||(40317044-40317088)
chr4 (34-78)||(40327118-40327162)
chr4 (34-78)||(40387470-40387514)
chr4 (34-78)||(41582450-41582494)
[»] chr5 (7 HSPs)
chr5 (34-159)||(40148901-40149027)
chr5 (34-167)||(40150105-40150239)
chr5 (40-100)||(8875458-8875518)
chr5 (34-137)||(24141455-24141559)
chr5 (40-82)||(20152790-20152832)
chr5 (34-75)||(42067908-42067949)
chr5 (40-100)||(8875624-8875684)
[»] chr2 (10 HSPs)
chr2 (36-137)||(6589680-6589782)
chr2 (34-137)||(28230060-28230164)
chr2 (28-166)||(3653372-3653510)
chr2 (32-100)||(202715-202783)
chr2 (34-78)||(28228673-28228717)
chr2 (32-81)||(199022-199071)
chr2 (40-89)||(8342196-8342245)
chr2 (37-134)||(43742000-43742098)
chr2 (40-89)||(6573056-6573105)
chr2 (40-89)||(8710836-8710885)
[»] chr8 (6 HSPs)
chr8 (34-137)||(2535871-2535975)
chr8 (34-78)||(11763057-11763101)
chr8 (34-100)||(10749867-10749933)
chr8 (40-82)||(35634474-35634516)
chr8 (43-100)||(27500435-27500492)
chr8 (39-100)||(44664516-44664577)
[»] chr3 (12 HSPs)
chr3 (32-82)||(6956249-6956299)
chr3 (34-137)||(47856390-47856494)
chr3 (34-100)||(43607783-43607849)
chr3 (34-100)||(1079580-1079646)
chr3 (34-137)||(21186016-21186120)
chr3 (34-78)||(23276364-23276408)
chr3 (40-89)||(13948789-13948838)
chr3 (34-75)||(25108479-25108520)
chr3 (40-89)||(32306792-32306841)
chr3 (33-78)||(32431573-32431618)
chr3 (39-100)||(33154885-33154946)
chr3 (34-78)||(1078540-1078584)
[»] chr7 (9 HSPs)
chr7 (114-161)||(11397462-11397509)
chr7 (38-137)||(18855975-18856075)
chr7 (40-100)||(43266275-43266335)
chr7 (40-82)||(23058438-23058480)
chr7 (40-89)||(43266634-43266683)
chr7 (34-137)||(13384505-13384609)
chr7 (34-78)||(18087719-18087763)
chr7 (34-137)||(18855413-18855517)
chr7 (107-151)||(20426637-20426681)
[»] chr1 (6 HSPs)
chr1 (34-137)||(32132307-32132411)
chr1 (40-101)||(35038464-35038525)
chr1 (39-78)||(44522155-44522194)
chr1 (40-89)||(40714811-40714860)
chr1 (40-100)||(40714453-40714513)
chr1 (40-100)||(49955704-49955764)
[»] scaffold0771 (1 HSPs)
scaffold0771 (40-89)||(929-978)
[»] scaffold0388 (1 HSPs)
scaffold0388 (40-100)||(12596-12656)
[»] scaffold0328 (1 HSPs)
scaffold0328 (40-100)||(11497-11557)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 349 - 500
Target Start/End: Original strand, 3175924 - 3176075
Alignment:
Q  349 caatttagtataagaaaaatggaagaacacgtaataactaattaatatcaacaacttgagcatttctagttttggtattcatagagaagggaacagagca 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  3175924 caatttagtataagaaaaatggaagaacacgtaataactaattaatatcaacaacttgaacatttctagttttggtattcatagagaagggaacagagaa 3176023  T
Q  449 cgttgttgttgttcatcaaaatcgtaacactcgcaagtaatgaaataaaatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176024 cgttgttgttgttcatcaaaatcgtaacactcgcaagtaatgaaataaaatc 3176075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 3175429 - 3175625
Alignment:
Q  15 aatatagttaaagttaagttttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcctacaaactaccctca 114  Q
    ||||||||||||||||||||||||||||||||||||||        ||  |||||||||||||| |||  ||||| ||||||||||||||||||| ||||    
T  3175429 aatatagttaaagttaagttttaatatgtgtttcgtcc--------aa--ttcatttaaaaattggtcactgtaatcgttgatcctacaaactacactca 3175518  T
Q  115 caaaatttaatcatctaaaatttagtctcccatcccaattaatcactaccacacaatccattatcaccctttctccaaccgcttggtctttaacctagtc 214  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175519 caaaatttaatcatctaaaatttagtctctcatcccaattaatcactgccacacaatccattatcaccctttctccaaccgcttggtctttaacctagtc 3175618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 234 - 350
Target Start/End: Original strand, 3175785 - 3175901
Alignment:
Q  234 ctcacaggttcatttgagaggtattcgttgtaggtccgttgcacatggaggtcttgaccaataataacaagtgtttctagttttgttgtattgaatcaaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175785 ctcacaggttcatttgagaggtattcgttgtaggtccgttgcacatggaggtcttgaccaataataacaagtgtttctagttttgttgtattgaatcaaa 3175884  T
Q  334 ctcgcacaacttgaaca 350  Q
     ||||||||||||||||    
T  3175885 ttcgcacaacttgaaca 3175901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 28498450 - 28498317
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    |||||||||||||||||||||||||||| || ||||||||||||| |||  ||||| || | |||||  |||||||||||| |||| ||||||||| |||    
T  28498450 tttaatatgtgtttcgtccctgcaattagggctcatttaaaaattggtccttgtaatcgctaatcctggcaaactaccctcccaaagtttaatcatttaa 28498351  T
Q  133 aatttagtctcccatcccaattaatcactaccac 166  Q
    ||||| ||| |  | |||| ||||||||| ||||    
T  28498350 aatttggtccctgagcccagttaatcactgccac 28498317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 29810861 - 29810728
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    |||||||||||||||||||||||||||| || ||||||||||||| |||  ||||| |  | ||| |  |||||||||||| |||| ||||||||| |||    
T  29810861 tttaatatgtgtttcgtccctgcaattagggctcatttaaaaattggtccttgtaatcactaatcatggcaaactaccctcccaaagtttaatcatttaa 29810762  T
Q  133 aatttagtctcccatcccaattaatcactaccac 166  Q
    ||||| ||| |  | |||| ||||||||| ||||    
T  29810761 aatttggtccctgagcccagttaatcactgccac 29810728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 30995101 - 30995144
Alignment:
Q  290 accaataataacaagtgtttctagttttgttgtattgaatcaaa 333  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  30995101 accaataataacaagtttttctagttttgttgtaatgaatcaaa 30995144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 15913965 - 15913927
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  15913965 atgtgtttcgtccttgcaattaagggtcatttaaaaatt 15913927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 166
Target Start/End: Original strand, 26463185 - 26463315
Alignment:
Q  37 aatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaaaat 135  Q
    ||||||| |||  |||||||||||| || || |||||||||| |||  ||||  |||| |||||  |||| ||||||  |||| ||||||||| ||||||    
T  26463185 aatatgtatttgatccctgcaattaggggtcgtttaaaaattggtccctgtattcgttaatcctggcaaattacccttgcaaagtttaatcatttaaaat 26463284  T
Q  136 ttagtctcccatcccaattaatcactaccac 166  Q
    || ||| | ||||||| ||||||||| ||||    
T  26463285 ttcgtccctcatcccagttaatcactgccac 26463315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 7905252 - 7905312
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  7905252 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccttgtaatcgttaatcct 7905312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 31406887 - 31406947
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  31406887 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcct 31406947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 580 - 640
Target Start/End: Original strand, 52302868 - 52302928
Alignment:
Q  580 caaaatatgaaataagaggaagattaggagtgtgttttccttgtgatagtgcagttatgtt 640  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  52302868 caaaatattaaataagtggaagattaggagtgtgtcttccttgtgatagtgcagttatgtt 52302928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 10203630 - 10203729
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaaaattta 138  Q
    |||||||||||||||  |||||||| |||||||||||||||||  ||||| |||| || || ||||| || ||| | ||||||||||||| |||||||||    
T  10203630 atgtgtttcgtccctataattaagggtcatttaaaaattagtcactgtaatcgttaattctgacaaattatccttataaaatttaatcatttaaaattta 10203729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 30641523 - 30641625
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcc-tacaaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||||||||||||||||| |||||| || ||||||||||||| |||  ||||| |||| |||| | |||| |||| | ||||| ||||||||| |||    
T  30641523 tttaatatgtgtttcgtccctccaattaggggtcatttaaaaatttgtc--tgtaatcgttaatccttgcaaattaccattacaaagtttaatcatttaa 30641620  T
Q  133 aattt 137  Q
    |||||    
T  30641621 aattt 30641625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 29321330 - 29321286
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  29321330 tttaatatgtgtttcgtccttgcaattaagggtcatttaaaaatt 29321286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 30642571 - 30642527
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  30642571 tttaatatgtgtttcgtccctgcaattatgggtcatttaaaaatt 30642527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 32062592 - 32062696
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    |||||||||||||| ||||||| ||||| || ||||||||||||| |||  ||||| | || ||||| ||||| || |||   ||||||||||||| |||    
T  32062592 tttaatatgtgtttggtccctgaaattaggggtcatttaaaaattggtccttgtaaacattaatcctgacaaattagccttgtaaaatttaatcatttaa 32062691  T
Q  133 aattt 137  Q
    |||||    
T  32062692 aattt 32062696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 40388531 - 40388487
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||    
T  40388531 tttaatatgtgtttcatccctgcaattaagggccatttaaaaatt 40388487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 41583656 - 41583612
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||| |||||||||||| || |||||||||||||    
T  41583656 tttaatatgtgtttcatccctgcaattaggggtcatttaaaaatt 41583612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 54858977 - 54858917
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| |||||| |||| |||||    
T  54858977 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcct 54858917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 11446274 - 11446317
Alignment:
Q  35 ttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||||||||||||||||||||  | |||||||||||||    
T  11446274 ttaatatgtgtttcgtccctgcaattagaggtcatttaaaaatt 11446317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 39701326 - 39701272
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgtt 94  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| |||||| ||||    
T  39701326 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctatgtaatcgtt 39701272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 52573645 - 52573596
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  52573645 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaa 52573596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 11523958 - 11524018
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  11523958 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctctgtaatcgttaatcct 11524018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 32063761 - 32063717
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||| ||| ||||||||||||| || |||||||||||||    
T  32063761 tttaatatgtattttgtccctgcaattaggggtcatttaaaaatt 32063717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 40317088 - 40317044
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||||||||||||||||| ||| || | |||||||||||    
T  40317088 tttaatatgtgtttcgtccctgcagttagggcttatttaaaaatt 40317044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 40327162 - 40327118
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||||||||||||||||| ||| || | |||||||||||    
T  40327162 tttaatatgtgtttcgtccctgcagttagggcttatttaaaaatt 40327118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 40387470 - 40387514
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||| |||||||||||| ||  ||||||||||||    
T  40387470 tttaatatgtgtttcatccctgcaattaggggccatttaaaaatt 40387514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 41582450 - 41582494
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||| |||||||||| | || |||||||||||||    
T  41582450 tttaatatgtgtttcatccctgcaatcaggggtcatttaaaaatt 41582494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 40148901 - 40149027
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatccta-caaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||||||||||||||||||||||||  | ||||||||||||| ||| |||||| |||| |||||| |||| ||||||  |||| ||||||||| |||    
T  40148901 tttaatatgtgtttcgtccctgcaattagagctcatttaaaaattggtccatgtaatcgttaatcctagcaaattaccctttcaaagtttaatcatttaa 40149000  T
Q  133 aatttagtctcccatcccaattaatca 159  Q
     | || ||| | ||||||| |||||||    
T  40149001 gaattggtccctcatcccagttaatca 40149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 40150239 - 40150105
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatccta-caaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||||||||||||||| |||||||| || |||||| |||||| |||  ||||| |||| ||||||  ||| ||||||  |||| ||||||||| |||    
T  40150239 tttaatatgtgtttcgtccttgcaattaggggtcattttaaaattggtccctgtaatcgttaatcctagaaaattaccctttcaaagtttaatcatttaa 40150140  T
Q  133 aatttagtctcccatcccaattaatcactaccaca 167  Q
     | || ||| | || || ||||||||||| |||||    
T  40150139 gaattggtccctcaacctaattaatcactgccaca 40150105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 8875458 - 8875518
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| ||||||||||  |||||||||||||||||  ||||| |||| |||||    
T  8875458 atgtgtttcgtccttgcaattaagcgtcatttaaaaattagtccctgtaatcgttaatcct 8875518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 24141455 - 24141559
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||||||||||||||||||||||||    ||||||||||||| |||  ||||| |||| |||||  |||| || |||  |||| ||||||||| |||    
T  24141455 tttaatatgtgtttcgtccctgcaattagacgtcatttaaaaattggtccctgtaatcgttaatcctggcaaattagccttgcaaagtttaatcatttaa 24141554  T
Q  133 aattt 137  Q
    |||||    
T  24141555 aattt 24141559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 20152790 - 20152832
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtc 82  Q
    ||||||||||||| ||||||||||  |||||||||||||||||    
T  20152790 atgtgtttcgtccatgcaattaagcgtcatttaaaaattagtc 20152832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 42067949 - 42067908
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaa 75  Q
    ||||||||||||||| |||||||||||| || ||||||||||    
T  42067949 tttaatatgtgtttcatccctgcaattaggggtcatttaaaa 42067908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 8875684 - 8875624
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  8875684 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcct 8875624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 6589782 - 6589680
Alignment:
Q  36 taatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaaaa 134  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||| || ||  |||| ||||||  |||| ||||||||| |||||    
T  6589782 taatatgtgtttcgtccctgcaattaagggtcatttaaaaattggtccatgtaatcgttaattctggcaaattacccttgcaaagtttaatcatttaaaa 6589683  T
Q  135 ttt 137  Q
    |||    
T  6589682 ttt 6589680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 28230164 - 28230060
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatccta-caaactaccctcacaaaatttaatcatctaa 132  Q
    |||||||||||||||||||||| ||||| || ||||||||||||| |||  ||||| |||| |||||| |||| ||||||  |||| ||||||||| |||    
T  28230164 tttaatatgtgtttcgtccctgtaattatgggtcatttaaaaattggtccctgtaatcgttaatcctagcaaattaccctttcaaagtttaatcatttaa 28230065  T
Q  133 aattt 137  Q
    |||||    
T  28230064 aattt 28230060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 3653510 - 3653372
Alignment:
Q  28 ttaagttttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcctacaaactaccctcacaaaatttaatca 127  Q
    ||||| ||||||| |||| ||||||||| ||||| || ||||||||||||| ||| |||||| |||| |||   |||| ||||||  |||| ||||||||    
T  3653510 ttaagctttaatacgtgtgtcgtccctgtaattatgggtcatttaaaaattggtccatgtaatcgttaatctggcaaattacccttgcaaagtttaatca 3653411  T
Q  128 tctaaaatttagtctcccatcccaattaatcactaccac 166  Q
    | |||||||| ||| | | ||| | ||||||||||||||    
T  3653410 tttaaaatttcgtccctcttccaagttaatcactaccac 3653372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 202783 - 202715
Alignment:
Q  32 gttttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    |||||||||||||||| ||||||| ||||| || ||||||||||||| ||| |||||| |||| |||||    
T  202783 gttttaatatgtgttttgtccctgtaattaggggtcatttaaaaattcgtccatgtaatcgttaatcct 202715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 28228673 - 28228717
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||||||||||||||||||||| || |||||||||||||    
T  28228673 tttaatatgtgtttcgtccctgcaattaggggtcatttaaaaatt 28228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 199022 - 199071
Alignment:
Q  32 gttttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagt 81  Q
    |||| ||||||||||| ||||||||||||| || ||||||||||||||||    
T  199022 gtttaaatatgtgtttagtccctgcaattagggatcatttaaaaattagt 199071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 8342196 - 8342245
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  8342196 atgtgtttcgtccttgcaattaagcgtcatttaaaaattagtctatgtaa 8342245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 43742098 - 43742000
Alignment:
Q  37 aatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaaaa 134  Q
    ||||||| ||||||||||||||||   | ||||||||||||| ||| |||||| | || ||||| ||||| ||||||  |||| ||||||||| |||||    
T  43742098 aatatgtatttcgtccctgcaattggaggtcatttaaaaattggtccatgtaatcattaatcctgacaaattacccttgcaaagtttaatcatttaaaa 43742000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 6573056 - 6573105
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    |||||||||||||||||||||| |  ||||||||||||| ||| ||||||    
T  6573056 atgtgtttcgtccctgcaattaggcgtcatttaaaaatttgtccatgtaa 6573105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 8710885 - 8710836
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  8710885 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaa 8710836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 2535975 - 2535871
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    |||||||||| ||||||||||||||||| || ||||||||||||| |||  ||||| |||| |||||  |||| |||||| ||||| ||||||||| |||    
T  2535975 tttaatatgtatttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcctggcaaattacccttacaaagtttaatcatttaa 2535876  T
Q  133 aattt 137  Q
    |||||    
T  2535875 aattt 2535871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 11763101 - 11763057
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  11763101 tttaatatgtgtttcgtccctgcaattaaggatcatttaaaaatt 11763057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 10749933 - 10749867
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||||||||| |||||||| || ||||||||||||| ||| |||||| |||| |||||    
T  10749933 tttaatatgtgtttcgtccttgcaattagggatcatttaaaaattggtccatgtaatcgttaatcct 10749867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 35634516 - 35634474
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtc 82  Q
    ||||||||||||| ||||||||||  |||||||||||||||||    
T  35634516 atgtgtttcgtccttgcaattaagcgtcatttaaaaattagtc 35634474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 27500492 - 27500435
Alignment:
Q  43 tgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    |||||||||| |||||||| || ||||||||||||| ||| |||||| |||| |||||    
T  27500492 tgtttcgtccttgcaattatgggtcatttaaaaattggtccatgtaatcgttaatcct 27500435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 44664516 - 44664577
Alignment:
Q  39 tatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    |||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  44664516 tatgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcct 44664577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 6956249 - 6956299
Alignment:
Q  32 gttttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtc 82  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6956249 gttttaatatgtgtttcgtccctgcaattagggatcatttaaaaattagtc 6956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 47856390 - 47856494
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||||||||||||||||||||||||||  || |||||||||| |||  ||||| |||| ||||| ||||| ||| ||  |||| ||||||||| |||    
T  47856390 tttaatatgtgtttcgtccctgcaattaagcgtcgtttaaaaattggtccttgtaatcgttaatcctgacaaattactcttgcaaagtttaatcatttaa 47856489  T
Q  133 aattt 137  Q
    |||||    
T  47856490 aattt 47856494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 43607783 - 43607849
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||  ||||| |||| |||||    
T  43607783 tttaatatgtgtttcgtccctgcaattaagcgtcatttaaaaattggtccctgtaatcgttaatcct 43607849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 1079646 - 1079580
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||||| |||||||||||| || ||||||||||||| |||  ||||| |||| |||||    
T  1079646 tttaatatgtgtttcatccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcct 1079580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 21186120 - 21186016
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaa 132  Q
    |||||||||||||| |||| |||||||| || ||||||||||||| ||  |||||| |||| |||||  |||| ||||||  ||||  |||||||| |||    
T  21186120 tttaatatgtgttttgtccatgcaattaggggtcatttaaaaattggtacatgtaatcgttaatcctggcaaattacccttgcaaaccttaatcatttaa 21186021  T
Q  133 aattt 137  Q
    |||||    
T  21186020 aattt 21186016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 23276408 - 23276364
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||| |||||||||||| || |||||||||||||    
T  23276408 tttaatatgtgtttcatccctgcaattaggggtcatttaaaaatt 23276364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 13948789 - 13948838
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  13948789 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccatgtaa 13948838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 25108520 - 25108479
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaa 75  Q
    ||||||||||||||| |||||||||||| || ||||||||||    
T  25108520 tttaatatgtgtttcatccctgcaattaggggtcatttaaaa 25108479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 32306841 - 32306792
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  32306841 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtcaatgtaa 32306792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 32431618 - 32431573
Alignment:
Q  33 ttttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||| ||||||||||| ||||| || |||||||||||||    
T  32431618 ttttaatatgtatttcgtccctgtaattaggggtcatttaaaaatt 32431573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 33154885 - 33154946
Alignment:
Q  39 tatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    |||||||||||||| |||||||| || ||||||||||||| |||  ||||| |||| |||||    
T  33154885 tatgtgtttcgtccatgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcct 33154946  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 1078540 - 1078584
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||| |||||||| |||||||| || |||||||||||||    
T  1078540 tttaatatgtttttcgtccatgcaattaggggtcatttaaaaatt 1078584  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 11397462 - 11397509
Alignment:
Q  114 acaaaatttaatcatctaaaatttagtctcccatcccaattaatcact 161  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  11397462 acaaaatttaatcatttaaaatttagtctctcatcccaattaatcact 11397509  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 18856075 - 18855975
Alignment:
Q  38 atatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct-acaaactaccctcacaaaatttaatcatctaaaatt 136  Q
    |||| ||||||||||||||||||| || ||||||||||||| |||  ||||| |||| ||| |  |||| ||||||  |||| ||||||||| |||||||    
T  18856075 atatatgtttcgtccctgcaattaggggtcatttaaaaattggtccctgtaatcgttaatcttggcaaattacccttgcaaagtttaatcatttaaaatt 18855976  T
Q  137 t 137  Q
    |    
T  18855975 t 18855975  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 43266275 - 43266335
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| |||||| |||| |||||    
T  43266275 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcct 43266335  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 23058438 - 23058480
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtc 82  Q
    ||||||||||||| ||||||||||  |||||||||||||||||    
T  23058438 atgtgtttcgtccttgcaattaagagtcatttaaaaattagtc 23058480  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 43266683 - 43266634
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  43266683 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaa 43266634  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 13384505 - 13384609
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatccta-caaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||| ||||||| ||||||||||||||| ||  |||||| || |||  ||||| || | |||||| |||||||||||  ||||  |||||||| |||    
T  13384505 tttaataagtgtttcatccctgcaattaagggtcgcttaaaatttggtccctgtaatcgctaatcctagcaaactacccttgcaaacgttaatcatttaa 13384604  T
Q  133 aattt 137  Q
    |||||    
T  13384605 aattt 13384609  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 18087763 - 18087719
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    |||||||||||||| |||| |||||||| || |||||||||||||    
T  18087763 tttaatatgtgtttagtccttgcaattaggggtcatttaaaaatt 18087719  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 18855413 - 18855517
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcctacaaa-ctaccctcacaaaatttaatcatctaa 132  Q
    |||||||||| |||||||||||||| || || ||||||||||| | |||  | ||| |||| |||||| ||| |||||||  ||||| |||||||  |||    
T  18855413 tttaatatgtttttcgtccctgcaaataggggtcatttaaaaaatggtccctataatcgttaatcctaaaaatctaccctttcaaaagttaatcaattaa 18855512  T
Q  133 aattt 137  Q
    |||||    
T  18855513 aattt 18855517  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 20426681 - 20426637
Alignment:
Q  107 taccctcacaaaatttaatcatctaaaatttagtctcccatccca 151  Q
    |||||||||||| ||||||||| |||||||||||| | |||||||    
T  20426681 taccctcacaaagtttaatcatttaaaatttagtccctcatccca 20426637  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 32132307 - 32132411
Alignment:
Q  34 tttaatatgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcc-tacaaactaccctcacaaaatttaatcatctaa 132  Q
    ||||||||||||||||||||| ||||||  | ||||||||||||| ||| |||||| |||| |||| | |||| ||| || ||||| ||||||||  |||    
T  32132307 tttaatatgtgtttcgtccctccaattagtggtcatttaaaaattcgtccatgtaatcgttaatccttgcaaattactcttacaaagtttaatcaattaa 32132406  T
Q  133 aattt 137  Q
    |||||    
T  32132407 aattt 32132411  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 35038464 - 35038525
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatccta 101  Q
    ||||||||||||| ||||||||||| |||||||||||||  || |||||| |||| ||||||    
T  35038464 atgtgtttcgtccttgcaattaagggtcatttaaaaattgatccatgtaatcgttaatccta 35038525  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 44522155 - 44522194
Alignment:
Q  39 tatgtgtttcgtccctgcaattaaggttcatttaaaaatt 78  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  44522155 tatgtgtttcgtccctgcaattagggatcatttaaaaatt 44522194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 40714860 - 40714811
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  40714860 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccatgtaa 40714811  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 40714453 - 40714513
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  40714453 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcct 40714513  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 49955764 - 49955704
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  49955764 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtctttgtaatcgttaatcct 49955704  T

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Target: scaffold0771 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 929 - 978
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaa 89  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||    
T  929 atgtgtttcgtccttgcaattaggcatcatttaaaaattagtccatgtaa 978  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 12656 - 12596
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||||||| |||||||| |  |||||||||||||||||  ||||| |||| |||||    
T  12656 atgtgtttcgtccttgcaattaggcgtcatttaaaaattagtccctgtaatcgttaatcct 12596  T

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Target: scaffold0328 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 11557 - 11497
Alignment:
Q  40 atgtgtttcgtccctgcaattaaggttcatttaaaaattagtcgatgtaaccgttgatcct 100  Q
    ||||||||| ||| |||||||| |  ||||||||||||||||| |||||| |||| |||||    
T  11557 atgtgtttcatccttgcaattaggcgtcatttaaaaattagtccatgtaatcgttaatcct 11497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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