View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_high_10 (Length: 270)
Name: NF16560_high_10
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 33563220 - 33563404
Alignment:
| Q |
68 |
cctcattttttgtgagtgtaattcacaccctcatctcataatacagcataactacatgtataatacacattttctattgtagtatatcgtaaatttgtaa |
167 |
Q |
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| T |
33563220 |
cctcattttttgtg--tgtaattcacaccctcatctcataatacagcataactacatgtataatacacattttctattgtagtatatcgtaaatttgtaa |
33563317 |
T |
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| Q |
168 |
-ttaatttgtacaatttaaaaatataaatatgtatagcaaacaacaattaaacatgcagtgtacaagcttgtatcccgggagcttact |
254 |
Q |
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| T |
33563318 |
tttaatttgtacaatttaaaaatataaatatgtatagcaaacaacaattaaacatgcagtgtacaagcttgtatccc-ggagcttact |
33563404 |
T |
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