View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_high_13 (Length: 236)
Name: NF16560_high_13
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 29249413 - 29249605
Alignment:
| Q |
16 |
atttgttcttgcctcgggttaacataaacttgtttttatcataattcnnnnnnnattaaacagtcaattccataaaatattctctgaactattaaaattg |
115 |
Q |
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| T |
29249413 |
atttgttcttgcctcgggttaacataaacttgtttttatcataattctttttttattaaacagtcaattccataaaatattctctgaactattaaaattg |
29249512 |
T |
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| Q |
116 |
actaaaaggtccataaactatgagaaataatcaatgtagtccctcaactataatctcatccatcaatttagtccctagaccagttaactgaag |
208 |
Q |
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| T |
29249513 |
actaaaaggtccataaactatgagaaataatcaatgtagtccctcaactataatctcatccatcaatttagtccctagaccggttaactgaag |
29249605 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 19173214 - 19173107
Alignment:
| Q |
100 |
tgaactattaaaattgactaaaaggtccataaactatgagaaata-atcaatgtagtccctcaactataatctcatccatcaatttagtccctagaccag |
198 |
Q |
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| T |
19173214 |
tgaactattaaaattaactaaaaggtccgtaaagtatgagaaatacatcaatatggtccataaactatactcttgtcgatcaatttggtcactaggtaag |
19173115 |
T |
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| Q |
199 |
ttaactga |
206 |
Q |
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| T |
19173114 |
ttaactga |
19173107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 12607260 - 12607316
Alignment:
| Q |
104 |
ctattaaaattgactaaaaggtccataaactatgagaaata-atcaatgtagtccct |
159 |
Q |
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| T |
12607260 |
ctattaaaatcaactaaaaggttcataaactatgaaaaatacatcaatttagtccct |
12607316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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