View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16560_high_15 (Length: 235)
Name: NF16560_high_15
Description: NF16560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16560_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21029843 - 21030064
Alignment:
| Q |
1 |
attggtaaacttcataagaacaaataaacagaccattgaaagatacattaataaaaagcaacactcttcaatgcttattgaatcataatttaaaataact |
100 |
Q |
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| T |
21029843 |
attggtaaacttcataagaacaaatacacagaccactgaaagatacattaataaaaagcaacactcttcaatgcttattgaatcataatttaaaataaat |
21029942 |
T |
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| Q |
101 |
tggcggttaatctttccataaagaagggaaaagaatagatatactttttcttcacattttccttaagcagtgcagcaataaaaaagaggacaagaatatt |
200 |
Q |
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| T |
21029943 |
tggcggttaatctttccataaagaagggaaaagaatagatatactttttcttcacattttccttaagcagtgcagcaataaaaaagaggacaagaatatt |
21030042 |
T |
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| Q |
201 |
tagtccaagagacaaactttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21030043 |
tagtccaagagacaaactttct |
21030064 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 37396515 - 37396568
Alignment:
| Q |
168 |
cagtgcagcaataaaaaagaggacaagaatatttagtccaagagacaaactttct |
222 |
Q |
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| T |
37396515 |
cagtgcagcaatcaaaaa-aggacaagaatatttagtccaagagacaaactttct |
37396568 |
T |
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